Gene Psyr_1373 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1373 
Symbol 
ID3366868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1555731 
End bp1556597 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content56% 
IMG OID637651712 
Productpeptidoglycan-binding LysM:peptidase M23B 
Protein accessionYP_234462 
Protein GI66044621 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.142196 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCTCA CAGTCATTCA GCAGCTCAGG TCTTCAAGAA GTTATCAGCG TCTGGTGATT 
GGCATTGCTC TCAGTGTCCT TTTGGTCGGC TGCTCCAGCT CGCCTTCAGG CGGCGTTCGC
GTGGTCGATC GCAACGGCAA TGCAGTCGCC CAGCGCCCGA CGGTGACCAC CGGCCAGTAT
GTGGTCAGGC GCGGTGACAC ACTTTTTTCC ATTGCATTTC GTTACGGCTG GGACTGGAAG
GCGCTGGCTG CCCGTAACCA GATCCCGGAG CCGTTTACCA TCAAGCCCGG TCAGACAATT
CGCTTTGACG GACGCTCCTC TTCAACGCCG AACGTGGTTT CAACGTCCGG CGCGGGGCGT
CCGGTGACGT CTACATCGAC CAGTACCGGC AGTTCCGGAT CCGTCAAAAC CACGGTCATG
TCCAAACCCG TTGCGGTTGT ACCTGTGGTT ATACCTCCGT CGGCGACCAC CGGGACAGGC
CCGGCCGGCA AGTCTCCGAC GGGTTGGACC TGGCCTTCGA GTGGCATTTT GATAGGAAAA
TTTTCCTCAA ACGGCAGTTT GAATAAAGGA ATTGATATCG CTGGTGATTT GGGACAGCCT
GTTTTGGCAG CGTCTGATGG TTCAGTTGTT TACGCCGGAA GTGGATTACG GGGCTACGGC
GAATTGATCA TCATCAAACA CAGCGATACC TACGTCAGTG CCTACGGTCA TAACCGCAGG
CTTTTGGTAC GGGAAGGACA ACAGGTCAAG GCAGGGCAGA CGATTGCCGA AATGGGGTCA
ACAGGAACTG ACCGGGTGAA ACTGCATTTT GAGATTCGCC GCCAAGGGAA ACCTGTAGAT
CCGTTAGGAT TCTTGCCACG TCGTTGA
 
Protein sequence
MSLTVIQQLR SSRSYQRLVI GIALSVLLVG CSSSPSGGVR VVDRNGNAVA QRPTVTTGQY 
VVRRGDTLFS IAFRYGWDWK ALAARNQIPE PFTIKPGQTI RFDGRSSSTP NVVSTSGAGR
PVTSTSTSTG SSGSVKTTVM SKPVAVVPVV IPPSATTGTG PAGKSPTGWT WPSSGILIGK
FSSNGSLNKG IDIAGDLGQP VLAASDGSVV YAGSGLRGYG ELIIIKHSDT YVSAYGHNRR
LLVREGQQVK AGQTIAEMGS TGTDRVKLHF EIRRQGKPVD PLGFLPRR