Gene Psyr_1369 details

Gene Information

• Locus tag: Psyr_1369
• Symbol: ispF
• ID: 3366864
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. syringae B728a
• Kingdom: Bacteria
• Replicon accession: NC_007005
• Strand: +
• Start bp: 1552580
• End bp: 1553053
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637651708
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_234458
• Protein GI: 66044617
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGTATTG GCCATGGCTA TGATGTGCAC CGTTTTGCTG AAGGCGACTT CATTACCTTG 
GGCGGCGTGC GGATTGCACA CGGGTTCGGC CTGCTGGCCC ATTCCGATGG CGATGTCCTG 
CTGCATGCCT TGAGCGACGC GCTTCTGGGC GCCGCAGCGC TGGGCGATAT CGGCAAGCAT 
TTTCCCGACA CCGATCCGCA GTTCAAGGGC GCCGACAGCC GCGTGCTGCT GCGTCATGTC 
CTCACGCTGA TCCATGGCAA AGGCTGGAAG GTCGGTAATG TCGACGCCAC CATCGTCGCT 
CAGGCACCAA AAATGGCACC GCATATCGAT GCCATGCGGG CATTGATCGC TGAAGATCTT 
CAGGTTGAGC CGGACCAGGT CAACGTCAAG GCCACAACGA CCGAAAAGCT TGGCTTTACC 
GGGCGTGAAG AAGGCATCGC GGTGCATGCC GTTGCGTTGT TGCTGCGCGC ATGA 

 

Protein sequence

MRIGHGYDVH RFAEGDFITL GGVRIAHGFG LLAHSDGDVL LHALSDALLG AAALGDIGKH 
FPDTDPQFKG ADSRVLLRHV LTLIHGKGWK VGNVDATIVA QAPKMAPHID AMRALIAEDL 
QVEPDQVNVK ATTTEKLGFT GREEGIAVHA VALLLRA