| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1365 |
|---|
| Symbol | ispD |
|---|
| ID | 3366860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1548753 |
|---|
| End bp | 1549463 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637651704 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_234454 |
|---|
| Protein GI | 66044613 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACT TTCTTCCTGC CTTCTGGGCA GTGATACCTG CAGCGGGCAT TGGTGCTCGC
ATGGCAGCCG ACCGTCCCAA GCAATACCTG TCACTGGGCG GCCTGACAAT TCTGGAACAC
AGCCTGCTTT GTTTTCTCGA TCACCCCCGT CTCAAGGGGT TGGTGATCAG TCTGGCTGTG
GACGACCCTT ACTGGGCGGC ATTGCCCTGC GCGCATGACA CTCGCATCCA GCGCGTGGAC
GGCGGCAGCG AGCGCTCAGG CTCGGTGCTC AACGCGCTTC TGCACCTGCA TGCGCAGGGC
GCCAGTGACA ATGACTGGGT GCTGGTTCAT GACGCTGCGC GTCCGAATCT GGCGCGCAGT
GATCTGGATA ATCTGCTCGG CGAGCTGGCC GATGATCCTG TCGGCGGCCT GCTGGCCGTG
CCGGCCCGCG ATACGCTCAA GCGTGCCGAC AGCAGCGGTC GCGTGCTTGA GACTGTGGAT
CGCAGCCTGG TCTGGCAAGC GTTCACGCCG CAGATGTTTC GTCTTGGGGC CCTGCATCGC
GCCCTGGCGG ACAGCCTGGT CTCCAACGTC AGCATCACCG ATGAGGCATC GGCCATCGAG
TGGGCAGGGC AGTCGCCCCG CCTGATCGAG GGGCGCTCGG ATAACATCAA GGTCACTCGC
CCCGAGGACC TGGAATGGCT ACGTCAGCGC CGCAGCGAGT TCGGGCGCTA G
|
|---|
| Protein sequence | MKDFLPAFWA VIPAAGIGAR MAADRPKQYL SLGGLTILEH SLLCFLDHPR LKGLVISLAV
DDPYWAALPC AHDTRIQRVD GGSERSGSVL NALLHLHAQG ASDNDWVLVH DAARPNLARS
DLDNLLGELA DDPVGGLLAV PARDTLKRAD SSGRVLETVD RSLVWQAFTP QMFRLGALHR
ALADSLVSNV SITDEASAIE WAGQSPRLIE GRSDNIKVTR PEDLEWLRQR RSEFGR
|
|---|
| |