| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1335 |
|---|
| Symbol | |
|---|
| ID | 3366830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1513884 |
|---|
| End bp | 1515125 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637651674 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_234424 |
|---|
| Protein GI | 66044583 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.11336 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTGA ACCCGCCTCC ACACGCTGGA CGAACAATGC CCCTCTTCTC TCCCTGGCGT
GGCGACTTCC CCGCCATCGC CGCCCTGCAA CGGCAAGGCC AGACTTATCT GGACAACGCC
GCCACGACGC AAAAGCCCCA GGCGCTGATC GACGCCCTGA CTCATTACTA TGCCAACGGT
GCCGCCAATG TGCATCGTGC CCAGCATCTG CCCGGCGCAC ACGCCACTCA AGCGTTCGAG
GCCAGCCGTG GCAAGGCCGC CCGCTGGCTG AATGCCGGCG AGAACGGCCA GATCATCTTC
ACTCACGGCG CGACGTCTGC GCTGAACCTG CTGGCCTACG GGCTGGAACA TGAATTCGCG
GCGGGCGACG AAATCGCCAT CAGCGCGCTG GAACATCACG CCAATCTGCT GCCATGGCAG
CAACTGGCTC AGCGTCGCGG CCTGAAACTG GTGGTTCTGC CGCTGGATAT CGATGGCGTG
ATCGACTGCG ACGCGGCAGC CAACCTGATC GGACCGCGCA CACGTCTGCT CGCCGTCACC
CAGCTCTCCA ACGTGCTCGG CACCTGGCAA CCGCTCGCTC GTCTTATCGC ACTGGCCAAG
ACCCAAGGCG CCATTACCGT CGTGGACGGC TCACAGGGCG TGGTGCACGG ACGCCACGAT
GTGCAGGCGC TGGGCTGCGA TTTTTATGTG TTTTCCAGCC ACAAACTGTA TGGCCCGGAA
GGACTCGGCG TGCTTTACGG GTGCAACGAG GCGCTGCCCA GCCTCGCGCA CTGGCAGTTC
GGCGGCGAGA TGGTGCTGAC AGCCGATTAT CAGCACGCGA AATTTCGTCC GGCACCCCTG
GGTTTCGAGG CCGGCACCCC GCCCATCGCC AGTGTGATCG GTCTGGGCGC TACGCTGGCC
TATCTGGACA GCCTCGATCA TCAGGCGGTC GCAGAACATG AAGCCAGACT GCACCGTCGC
CTGCTTGAGG GCCTGCAACA GCGTAATGGC ATCCAGGTTC TGGGCTCGCC GGATCTGGCA
CTGGTCAGCT TCGTCGTCGA CGATGTTCAC AATGCTGATG TGGCTCACCT GCTGACCGAA
CAGGGCATTG CCGTACGTGC CGGTCATCAT TGCGCGATGC CGCTGTTCAA GACCCTTGGC
CTGCCCGGCG CGATTCGCGT GTCACTGGCG CTGTACAACG ATTCGGACGA TCTGCTGCAG
TTCTTCAGCG CACTGGATCA AGCACTGGAG CTGCTTCGAT GA
|
|---|
| Protein sequence | MALNPPPHAG RTMPLFSPWR GDFPAIAALQ RQGQTYLDNA ATTQKPQALI DALTHYYANG
AANVHRAQHL PGAHATQAFE ASRGKAARWL NAGENGQIIF THGATSALNL LAYGLEHEFA
AGDEIAISAL EHHANLLPWQ QLAQRRGLKL VVLPLDIDGV IDCDAAANLI GPRTRLLAVT
QLSNVLGTWQ PLARLIALAK TQGAITVVDG SQGVVHGRHD VQALGCDFYV FSSHKLYGPE
GLGVLYGCNE ALPSLAHWQF GGEMVLTADY QHAKFRPAPL GFEAGTPPIA SVIGLGATLA
YLDSLDHQAV AEHEARLHRR LLEGLQQRNG IQVLGSPDLA LVSFVVDDVH NADVAHLLTE
QGIAVRAGHH CAMPLFKTLG LPGAIRVSLA LYNDSDDLLQ FFSALDQALE LLR
|
|---|
| |