| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1292 |
|---|
| Symbol | |
|---|
| ID | 3366787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1457808 |
|---|
| End bp | 1461437 |
|---|
| Gene Length | 3630 bp |
|---|
| Protein Length | 1209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637651631 |
|---|
| Product | PAS |
|---|
| Protein accession | YP_234381 |
|---|
| Protein GI | 66044540 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.746783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCG TAGTCAGGGA GACAGGCAGC ACATCGAGAT GCCGCGCATG GCGCCGGGTG
TGGATGTTGC TGGCGCTGGT TTTTGCCGGG GCAGCCAATG CGGCGCAAAG CTTGCCGTTT
TCACTGACAG CTCCTTTTGT GGCTTCAGCG GATATGGTTC TCGAAGATCA GGACCGGGCC
TGGCTCGACC AGCGCAAGGT GCTTCAGGTC GGCATTGCGA TCGCAGACTA CGAACCGATC
GACATCACCA GTGACCGCAA CCGTTATCAG GGCATCAGTG CTGACTACCT GGGGCTGGTC
AGCGACCAGT TGAACCTCCC GGTGCAGGTC ACCGGTTTTG CCAAGCGTGA CGAGGCTATC
GAGGCGCTGC GCGACGGCAA GATAGATCTG CTGACCAGTG CCAATGGTTT CGAACGGGGT
GTGAAAGGAC TGTCTTTCTC AACCGAATAC ATGCCCGATC GATCGGTAGT GGTTGGCCGC
GGCAACGATC TGAGCCCGTC GTCGAGCCTG GCCGGCAAGA AGGTCGTACT GCTTGATGGC
TATGCCGATT CGGACGTGCT GCACCGCATT TATCCTGACA GCCAGATCAT TATTGCGCCT
AACCTCTACA GTGCTCTGGA AGCCCTGAGT CAGGGTGAAG TGGACGTGTT CATCGGTAAC
GAAGTCATCG TCCGTACCTA CACTGCCCTG CGGCCCTATC TCGGTTTGCA GATCAAATTC
GAAAGTCGTC TGCCCCCGGT GGGGTTTTCC TTTGCGGTCA GGGATGATGA GCAGCGCTTG
CTGAACTTCA TCAATCGGGC CCTGGACAGC ATCGCACCTT CGACCAGTCG TGAAGTGCTC
GGCCGCTGGA CCATGGGGCT GGGCGCCGAC GTGGAAGGAC AACGCATTCG CCTCACCAGT
GCCGAGCGAC GCTGGCTGCT CAAGCATCCG AGTGTGACCA TCGCGACCGT GCAGCACCCA
CCGTATATCT ACAAAGACAA TAACGGCCAC TGGGTAGGGT TGAACGCAGA TGTGCTGTCA
CGTATCTCGC GGATGACCGG CTTGCAGTTC GTCCATCAGG AATCACTTTC CACGCAGCAG
AGCATCGACA TGCTGCGCGC CGGCCAGGCC GACATGAACA CCACGCTCGC GGAAAATACC
GAGCGCCGAA GGTTTCTGGA CTTTACCTAT TCGTTCGGCG GCAATAGCTG GATGTTCGTG
GTGCGCTCCG ACCACTCGTC CCGCATATCG CTCGACAGTC TGGCCGGGAA AGTACTGGCA
CTGCCGGCCA GGCATGCGCT CGAAGACCTG ATCAGGCGCG AACACCCCTT GATCCAGCTG
CGGCTGGTCA ATACCTATGA TCAGGCTCGC GCGCTGGTGG AAAGTGGTGC TGCCGACGCG
ACCATTCAGA ATGAAGTGGG GGCCTACCTG TTTCCGTCCG GAGAGTTGAA GGTCGCCAGA
AGTGTCGAAG GTCAGTGGTC ACCCGACAGA TTTTCAGTGA TCAAGACCCA GCCCGAACTG
CTGGGGATTC TGAACAAGGC GCTGGAGGAG TTCCCGGTGG CCGAATTGCG CTCGATCCGT
CTGAAGTGGC TGGGATCAGC GCTGCCTCAG CCGTCGCTCT GGGCGCGCAT ACCGCCGTGG
GTATTCTGGG TGGTGTCCCT GGCGCTGCTG ACCGGGCTGG TGTCGCTGAC CTGGAGCAGT
CGCCTCAAGG TGCAGATTCG CCAGCGGCAA AGGGCGCAAA GACAGCTCAA TGATCAACTG
GCCTTCAAGC ACGCGCTGCT CGACGGTATC CCCAATCCGA TCTATGTGCG CGATCTCAAA
GGGCGCCTGA TTTCCTGCAA CCGCAGCTAC GAGCAGAGTC TGGGCATCAG TTTCGAACAG
ATGAATGGCC GACGCCTCAC GGACGTCAAT CTGATTCCGC GTGCGTTGGC CGAGCAGATG
CATACCGATT ACCTCAATCT GCTGGAAAAT CATCAGCCGG TCTTTTCCGA TCGCACCATC
GAACTGCCTG GCAAACGTAT GGATGTCTGG CAATGGACGG TGCCTTTCTT CGCCGCCGAT
GGTCAGCTGC AGGGGCTGCT CGGCGGCTGG ATCGATATCA CCGAACGCAA GCAGCTGGAA
CAGCAGCTTC AGGAAGCCAC GCGTCTCGCC GCTCAGGCCA ACGAGGCAAA AAGCGCTTTT
CTGGCCAGCA TGAGCCATGA AATTCGTACG CCGATGGGGG CAATCATTGG CTTGCTGGAA
CTGGAATGCG AACAGGCCTT GCGCTTGGGC ACGATGCCGT CGCAAGGCCT GCAAGTGGCT
CACCGCTCGG CTACGGAGCT GGTCGCGCTG ATTGGCGAAA GTCTTGATCT GGCCAGAATC
GAAGCGGGCG GCATGCAGTT GTCACTGGCT GTCACCTCCC TGCAAGGGCT TTTCGACGGT
GTGATCGAGC TTTTTTCCGC ACAGGCTCGG GAAAAGGGTG TGGAGCTACG CCTGGAATTC
TCTGCGCAGG CGCGCGGCGA CTACTGGCTG GATCCCTTGA GGTTGCGCCA GGTGTTGCAC
AATGTGCTGG GCAACGCCTT GAAATTCACC CGTCAAGGTG CGGTGGTCGT GAGGCTCGAT
GTGACCAGCG ATTCGCCTGA GTCCACGCGT GTGCGCATTG GTATCCAGGA CAGTGGCGAA
GGTATCGATC CGCAGCGTCA GCAGCAGGTA TTTCAACCTT TCACTCAGGC GAACGACGAC
ACGGCCGCCC ACTACGGGGG CAGCGGGCTG GGGTTGAGCA TCACCCGGCA ACTGGTGGAG
CTGATGAGGG GCGATATCAG CCTGCACAGC GAGCCGGGCA AGGGGACCCT TGTTACCATC
GACCTGCCGT TGACCAGGGT GAGCGAGCCG GTTTTGCCAG CGGACGATGT GACGGATGCG
CCTGTCGACA CGCGTAGTCT TCATCTGTTG GTGGTCGATG ACATGTCCGC CAATCGCCTG
GTATTGACCC GCCAGCTGGA GTTTCTTGGC CATCAGGTAA CGGCTGTCGA AGATGGCAAG
GCGGCGTTGT CGAATTGGTG TGAAGGGGCG TTCGATGCGG TCATCACCGA TTGCAATATG
CCGGGTATCA GCGGCTACGC GTTGACCCAG GCCATTCGCC AGATCGAAGA GAAAGAACAG
CGTCAGCGCT GCCCGGTGAT TGGCTGTACC GCCAACGCGA TGAGTGACGA GGCGGCACGT
TGCGAGCAGG CAGGCATGGA CGGCCTGCTG ATCAAGCCGC TGTCGCTGGC GCGTCTGGCC
CAGGAGCTGG CAGATCGGGT ACGCGAGCCG ACGTTCGACA TCGGCACGCT GCAAGCCATG
ACTCAGGCCA ACCCGCAACA AATGCAACGG TTGCTGAGCG AGTTATGGAA GAACCTCAGG
CATGAGCACG CGTTGCTGGA GCCCGCAGTG TCGGCCAATG ACTGGAAGAC CCTGGGCGCC
TGTCTGCATC GGCTCAAGGG CGCGGCGAGT CTGGTCGACG CTGTGCCGCT CGCCAAGGCG
TGTGCCGCGC TGGACGACAG TGTACGGCTG CAGAGCGCAG CCAGGCTGGC CGAACGCTGG
CAGGTACTGG AAGTGGCCAT GACCGGTCTG CGCGCGGATA TCGAATTGCA ACTGGTGGCC
GTGCCCGAGA CCGCGGTGCC AGGCGCTTGA
|
|---|
| Protein sequence | MQSVVRETGS TSRCRAWRRV WMLLALVFAG AANAAQSLPF SLTAPFVASA DMVLEDQDRA
WLDQRKVLQV GIAIADYEPI DITSDRNRYQ GISADYLGLV SDQLNLPVQV TGFAKRDEAI
EALRDGKIDL LTSANGFERG VKGLSFSTEY MPDRSVVVGR GNDLSPSSSL AGKKVVLLDG
YADSDVLHRI YPDSQIIIAP NLYSALEALS QGEVDVFIGN EVIVRTYTAL RPYLGLQIKF
ESRLPPVGFS FAVRDDEQRL LNFINRALDS IAPSTSREVL GRWTMGLGAD VEGQRIRLTS
AERRWLLKHP SVTIATVQHP PYIYKDNNGH WVGLNADVLS RISRMTGLQF VHQESLSTQQ
SIDMLRAGQA DMNTTLAENT ERRRFLDFTY SFGGNSWMFV VRSDHSSRIS LDSLAGKVLA
LPARHALEDL IRREHPLIQL RLVNTYDQAR ALVESGAADA TIQNEVGAYL FPSGELKVAR
SVEGQWSPDR FSVIKTQPEL LGILNKALEE FPVAELRSIR LKWLGSALPQ PSLWARIPPW
VFWVVSLALL TGLVSLTWSS RLKVQIRQRQ RAQRQLNDQL AFKHALLDGI PNPIYVRDLK
GRLISCNRSY EQSLGISFEQ MNGRRLTDVN LIPRALAEQM HTDYLNLLEN HQPVFSDRTI
ELPGKRMDVW QWTVPFFAAD GQLQGLLGGW IDITERKQLE QQLQEATRLA AQANEAKSAF
LASMSHEIRT PMGAIIGLLE LECEQALRLG TMPSQGLQVA HRSATELVAL IGESLDLARI
EAGGMQLSLA VTSLQGLFDG VIELFSAQAR EKGVELRLEF SAQARGDYWL DPLRLRQVLH
NVLGNALKFT RQGAVVVRLD VTSDSPESTR VRIGIQDSGE GIDPQRQQQV FQPFTQANDD
TAAHYGGSGL GLSITRQLVE LMRGDISLHS EPGKGTLVTI DLPLTRVSEP VLPADDVTDA
PVDTRSLHLL VVDDMSANRL VLTRQLEFLG HQVTAVEDGK AALSNWCEGA FDAVITDCNM
PGISGYALTQ AIRQIEEKEQ RQRCPVIGCT ANAMSDEAAR CEQAGMDGLL IKPLSLARLA
QELADRVREP TFDIGTLQAM TQANPQQMQR LLSELWKNLR HEHALLEPAV SANDWKTLGA
CLHRLKGAAS LVDAVPLAKA CAALDDSVRL QSAARLAERW QVLEVAMTGL RADIELQLVA
VPETAVPGA
|
|---|
| |