Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1283 |
Symbol | rimM |
ID | 3366778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1449236 |
End bp | 1449775 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637651622 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_234372 |
Protein GI | 66044531 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.896512 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCGA CGCCTGCATC TGCCGACGAT CTGATCGTCA TTGGCAAGAT TTACTCGGTT CATGGCGTTC GCGGCGAAGT GAAGGTTTAT TCCTTTACTG ATCCGATTGG AAACCTGTTG GACTACAAAA CCTGGACGCT TCGGCGCGAA GGCAGCGTTG ATAAACAGGT GGAGCTGGTC AGCGGACGCT TGCAAAGCAA GTTTCTGGTC ACAAAGCTCA AGGGTCTCGA TGATCGTGAA GAAGCGCGTC TTCTGTCCGG TTACGAAATC TGCGTGCCGC GTAACCTGTT CCCTGATCTG GACGATGGCG AGTACTACTG GTACCAGCTT GAAGGCCTCA AGGTCATCGA CCAACTCGGG CAACTGCTCG GGAAAATCGA TCACCTGCTC GAAACCGGTT CGAACGATGT AATGGTTGTA AAGCCCTGCG CGGGTAGCCT GGATGATCGC GAACGCCTGT TGCCCTATAC GGAGCAATGC GTGTTGGCAA TCGATATGGC TGCTGGCGAG ATGAAGGTGG ATTGGGACGC GGACTTCTGA
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Protein sequence | MNATPASADD LIVIGKIYSV HGVRGEVKVY SFTDPIGNLL DYKTWTLRRE GSVDKQVELV SGRLQSKFLV TKLKGLDDRE EARLLSGYEI CVPRNLFPDL DDGEYYWYQL EGLKVIDQLG QLLGKIDHLL ETGSNDVMVV KPCAGSLDDR ERLLPYTEQC VLAIDMAAGE MKVDWDADF
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