Gene Psyr_1234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1234 
Symbol 
ID3366729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1392536 
End bp1393300 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content63% 
IMG OID637651573 
ProductRNA methyltransferase TrmH, group 1 
Protein accessionYP_234323 
Protein GI66044482 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0565] rRNA methylase 
TIGRFAM ID[TIGR00050] RNA methyltransferase, TrmH family, group 1 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.600347 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTGCAGA ACATTCGTGT TGTCCTGGTC GGCACTACCC ATCCCGGAAA TATCGGCGGG 
GCGGCTCGCG CCATGAAAAA CATGGGGCTT TCGCGTCTGG TGCTGGTCGA TCCGCGGATC
TTCCCTTCGC CCGATGCCGA TGCGCGTGCG TCCGGCGCTA CCGACATCCT CGAGGGCGCG
CAGGTGGTGG CGACCCTCGA AGAAGCGCTG GTCGGCTGCC GTCTGGTGCT GGGCACCAGC
GCGCGGGATC GAAGCCTGCC TTGGCCCATG CTGGATCCGC GCGCCTCGGG TGAAAAAGTC
ATCGAGCAGG CCGGTGAGGG CGCCGAGGTG GCACTGGTGT TCGGTCGTGA GCACGCGGGC
TTGACCAACG AAGAGCTGCA GCGCTGCCAC TTCCATGTGC ACATCCCGTC TGACCCTGCG
TTCAGTTCGC TCAATCTGGC GGCTGCCGTA CAGGTGCTCA GTTATGAGGT GCGCGTAGCC
TGGCTGGCTG CGGCGGAGCA AGGCGAGGCT TCAAGACCCG CGTCGGCGCA CAATGCCGAG
CTGGCGACGA TGGACGAAAT GGAAGGTTTC TACACCCATC TTGAGGCCAC GCTTGTGGCC
ATCGGCTTTC TTGATCCGGA AAAGCCGCGG CATCTGATGG CCCGGCTGCG CAGACTGTAC
GGGCGTAGCG AAGTCGAACG TTCCGAGCTG AGTATCCTGC GCGGTGTGCT CACCGAAACC
CAGAAAGCCG CACGCGGTGA ACCCTACAAG CGAAAGGATC AGTGA
 
Protein sequence
MLQNIRVVLV GTTHPGNIGG AARAMKNMGL SRLVLVDPRI FPSPDADARA SGATDILEGA 
QVVATLEEAL VGCRLVLGTS ARDRSLPWPM LDPRASGEKV IEQAGEGAEV ALVFGREHAG
LTNEELQRCH FHVHIPSDPA FSSLNLAAAV QVLSYEVRVA WLAAAEQGEA SRPASAHNAE
LATMDEMEGF YTHLEATLVA IGFLDPEKPR HLMARLRRLY GRSEVERSEL SILRGVLTET
QKAARGEPYK RKDQ