Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1230 |
Symbol | secD |
ID | 3366725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1388001 |
End bp | 1389869 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637651569 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_234319 |
Protein GI | 66044478 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.888537 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAACA AATACCCTCT GTGGAAATAC GTACTGATCC TGGCGGTGCT GGTGGTCGGT TTTATTTATT CCGCACCCAA TCTCTACCCT GATGATTCTG CCATCCAGAT CAGCGGCGCA AGCACTGCGC TGCAAGTCAA TCAGGCGGAC GTGGATCGTG CAGCCAAGGC GCTTGCCGAT GCCGGCATCT CGGTCAAGGC TTCTTCTCTG GCCGAGAATG GCAAGGGCGG TTTGTTGCGT CTGAGCAAGC AGGAAGACCA GTTGCCAGCC AAGGATGTCG TGCGCAAGGC GTTGGGTGAC GACTATGTCG TTGCACTGAA CCTGGCGCGT ACCACGCCGA CCTGGTTGCG TAACCTGGGT GCAAGCCCGA TGAAGCTCGG TCTCGACCTG TCCGGCGGTG TGCACTTCCT GCTGGAAGTC GACATGGACA AGGCGATCGA TGCACGTCTG AAAGTCTACG AAGGCGAAGT CAAATCCCTG TTGCGCAAGG AAAAGGTGCG TTATCGCAGC CTGCCGCAGC TGGGCAATGT GATTCAGCTG GGCTTCACCG ACGATGCAGA GCGCGAGCAG GCTCGTGCAC TGGTGCGCAA GAGCTTTACC GATTTCGAAA TCACGCCTGC CGAGCTGAAC GGTATCCCTG TACTGCGCAT GGCGCTGACG CCGGCCAAGC TGGCCGAGAT TCGTGAATAC TCGATCAAAC AGAACCTGAC CACCGTCCGT AACCGGGTCA ACGAGCTGGG TGTTGCCGAG CCGCTGGTTC AGCGTCAGGG CGCCAACCGC ATCGTGGTCG AGTTGCCGGG TGTGCAGGAC ACGGCCGAAG CCAAGCGTAT TCTGGGCAAG ACCGCCAACC TCGAATTCCG TCTGGGTGCA GGCCCGGATG ATTCGAAAGG CACCACCGAG ATGTTCGAAT TCCGCGAAGG CGGTCGTCCG GCAGCGGCGG TGGAGCGTGG TCTGATCATT ACCGGTGATC AGGTGACTGA CGCCAAGGCC AGCTTCGACG AGCATGGTCG TCCACAGGTG AACATCAACC TCGATGGTCA TGGTGGCGAA CTGATGAGCC GTGCAACCCG CAGCAATGTG GGACGCAGCA TGGCGGTGAT CTTCATCGAA CAGCGTCCGA CCACCACCTA CACCAGGCAG ATGGTCGACG GTGTCGAGAA AGACGTGCCG GTGCAGACCT TCAAGGAAGA CAAGAAAATC ATCAGCCTGG CGACCATCCA GTCGCCACTG GGCAGTCAGT TCCGGATTAC CGGTCTGAAC GGTCAGGGTG AATCTTCCGA GCTGGCGCTG CTGTTGCGTG CCGGTGGTCT GGCGGCACCG ATGTACTTCG CCGAAGAGCG CACCATTGGT CCTAGCCTGG GTGCCGACAA CATCACCAAG GGTATCGACG CTTCCTTGTG GGGCATGCTG TTCGTCTCGA TCTTCATCAT GGCGATCTAC CGTTTCTTCG GTCTGATCGC GACTGTCGCA CTGGCCCTGA ACATGGTCAT GCTGCTGGCC TTGATGTCCT TGCTGGGGGC AACGCTGACC CTGCCGGGTA TCGCCGGTAT CGTGTTGACC ATGGGTATGG CGGTGGACGC CAACGTGCTG ATCTTCTCGC GGATTCGTGA GGAGATCGCC AACGGCATGA CGGTCCAGCG TGCTATCAAC GAAGGTTTCG ATCGTGCCTA CACGGCGATC CTCGACGCCA ACCTGACGAC GCTGCTGGTC GGCGGCATCC TCTTTGCAAT GGGCACCGGC CCGGTCAAAG GGTTTGCGGT GACCATGTCG CTCGGGATCT TTACCTCGAT GTTCACGGCC ATCATGGTGA CCCGCGCTAT GGTCAACCTG ATCTACGGCG GTCGTGACTT CAAGAAGTTG TGGATTTAA
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Protein sequence | MLNKYPLWKY VLILAVLVVG FIYSAPNLYP DDSAIQISGA STALQVNQAD VDRAAKALAD AGISVKASSL AENGKGGLLR LSKQEDQLPA KDVVRKALGD DYVVALNLAR TTPTWLRNLG ASPMKLGLDL SGGVHFLLEV DMDKAIDARL KVYEGEVKSL LRKEKVRYRS LPQLGNVIQL GFTDDAEREQ ARALVRKSFT DFEITPAELN GIPVLRMALT PAKLAEIREY SIKQNLTTVR NRVNELGVAE PLVQRQGANR IVVELPGVQD TAEAKRILGK TANLEFRLGA GPDDSKGTTE MFEFREGGRP AAAVERGLII TGDQVTDAKA SFDEHGRPQV NINLDGHGGE LMSRATRSNV GRSMAVIFIE QRPTTTYTRQ MVDGVEKDVP VQTFKEDKKI ISLATIQSPL GSQFRITGLN GQGESSELAL LLRAGGLAAP MYFAEERTIG PSLGADNITK GIDASLWGML FVSIFIMAIY RFFGLIATVA LALNMVMLLA LMSLLGATLT LPGIAGIVLT MGMAVDANVL IFSRIREEIA NGMTVQRAIN EGFDRAYTAI LDANLTTLLV GGILFAMGTG PVKGFAVTMS LGIFTSMFTA IMVTRAMVNL IYGGRDFKKL WI
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