| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1215 |
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| Symbol | |
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| ID | 3366709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1371411 |
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| End bp | 1373498 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637651556 |
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| Product | Type III secretion protein HrcV |
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| Protein accession | YP_234307 |
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| Protein GI | 66044466 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.141393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.819529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGGG TCATCAACTT TCTGAACATG GTCGCGCTGT CGGCCATGCG CCGCTCGGAA
CTGGTCGGTG CGTTTTTTGT GATCGCCATC GTGTTCATGA TGATCACGCC GCTGCCCACC
GGGTTGATCG ACGTGCTGAT CGCCGTGAAC ATCTGTATTT CCTGCCTGCT GATCATGCTG
GCGATGCACC TGCCCAGGCC ACTGGCGTTC TCGACCTTCC CTGCCGTGCT GCTGCTGACC
ACGATGTTTC GCCTGGCCCT GTCGGTTTCC ACCACGCGGC TGATTCTGCT CAACCAGGAC
GCCGGGCACA TCGTCGAGGC GTTCGGGCAG TTCGTGGTGG GCGGCAACCT GGCGGTGGGT
CTGGTGATCT TCCTGATCCT GACGGTGGTC AACTTTCTGG TGATCACCAA AGGTTCGGAA
CGGGTCGCCG AAGTCGGTGC GCGGTTCACT CTGGATGCGA TGCCCGGCAA GCAGATGTCC
ATCGACAGTG ACCTGCGCGC CAACCTGATC ACCGTCCACG AGGCCCGTAA ACGACGCGCC
GAACTGAACA AGGAAAGCCA GTTGTTCGGT GCGATGGACG GCGCCATGAA ATTCGTCAAC
GGCGATGCGA TCGCCAGCCT GATCATTGTT GCCATCAACA TGATCGGCGG CATTTCCATC
GGTGTGCTTC AGCACAACAT GGCGGCGGGC GACGCCTTGC AGCTGTATAC CGTACTGACC
ATCGGTGACG GTCTGATCGC GCAGATTCCG GCCCTGCTGA TCTCCGTGAC CAGCGGCATG
ATCATCACCC GCGTGCCCAA CACCGAGGCG GGTGTGGAAG CCAACATCGG CCGCGAGATC
GCCGAGCAGA TTACCAGCCA GCCCAAGGCC TGGATCATCG CCTCGGTGGC CATGCTCGGC
TTCGCTGCAC TGCCGGGAAT GCCGACCGGT GTTTTCATCA CCATCGCGAT CATCTGCGGT
GCCGGTGGAC TGCTGCAGTT GCAACGGGCA AAACCCAAGG CCGATGAGCA ACGTACAGCC
ACTGTGGCGC CAGAAATGAA CGGCAAGGAA GACCTGCGTA CTTTCTCGCC CAGCCGCCAG
TTTGTGCTGC AATTCCACCC CGGTCAGGAC AGCGCGCAGA TCGAAGCGCT GGTCAGCGAA
ATACGCAAGC GCCGCAACCG TCTGGTGGTG CAGTACGGCC TGACCCTGCC TTCGTTCATC
ATCGAGCACG TCGATGACAT TGCCCCGGAC GAGTTTCGCT TCACCGTCTA TGACGTACCG
ATGCTCAAGG CCACCTTTAC GCAGAGCCAT GTCGCCGTGG AAGCGCGCCA GCTGGAAGGT
GAAAACCTTC CGGCAGCCAT CCCGGGCAAT ACCGACCGCC AGGAAGATCA ATGGGTCTGG
CTGCCTGCCG AGCAGTCCGG CGAATTGAAC CCGGTCAGTT CCACGACCCT GATCATCGAA
CGCATGGAGC GCGCATTGCA GTCCTGCGCA CCGCAGTTCA TCGGCTTGCA GGAAACCAAA
GCCATCCTCG GCTGGCTGGA GTCCGAGCAA CCGGAACTCG CTCAGGAAAT GCAACGGGTC
CTCACCCTGA CGCGCTTCTC GGCTGTCCTG CAACGCCTGG CCTCGGAGTG TGTGCCGCTG
CGGGCGATCC GGGTCATTGC CGAAACCCTG ATCGAGCACT GTCAGCATGA ACGCGATACC
AATGTGCTGA CCGACTATGT GCGCATTGCG CTCAAGTCGC AGATCTACCA CCAGTACTGC
GGTGCCGAAG GCCTGCAAGT GTGGCTGCTG ACGCCGGAAA GCGAGGGGTT GTTGCGTGAT
GGCCTGCGCC AGACGCAAAC CGAAACATTC TTCGCGCTGA GCAACGAGAT CAGCCAGATG
CTCGTGCAAC AGCTGCACAT TGCCTTCCCG GTACGAGCTC CCGAACAGGC GGTTCTGCTG
GTGGCACAGG ATCTGCGCAG CCCTCTGCGT ACATTGTTGA GGGAGGAGTT CTACCATGTA
CCCGTACTAT CTTTCGCGGA AATCAGCAAC GCGGCCAAGG TCAAGGTCAT GGGTCGATTC
GACCTTGAAG ACGATCTCGA GGCGCTGGAC AACGAGCACG CTGCCTGA
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| Protein sequence | MNRVINFLNM VALSAMRRSE LVGAFFVIAI VFMMITPLPT GLIDVLIAVN ICISCLLIML
AMHLPRPLAF STFPAVLLLT TMFRLALSVS TTRLILLNQD AGHIVEAFGQ FVVGGNLAVG
LVIFLILTVV NFLVITKGSE RVAEVGARFT LDAMPGKQMS IDSDLRANLI TVHEARKRRA
ELNKESQLFG AMDGAMKFVN GDAIASLIIV AINMIGGISI GVLQHNMAAG DALQLYTVLT
IGDGLIAQIP ALLISVTSGM IITRVPNTEA GVEANIGREI AEQITSQPKA WIIASVAMLG
FAALPGMPTG VFITIAIICG AGGLLQLQRA KPKADEQRTA TVAPEMNGKE DLRTFSPSRQ
FVLQFHPGQD SAQIEALVSE IRKRRNRLVV QYGLTLPSFI IEHVDDIAPD EFRFTVYDVP
MLKATFTQSH VAVEARQLEG ENLPAAIPGN TDRQEDQWVW LPAEQSGELN PVSSTTLIIE
RMERALQSCA PQFIGLQETK AILGWLESEQ PELAQEMQRV LTLTRFSAVL QRLASECVPL
RAIRVIAETL IEHCQHERDT NVLTDYVRIA LKSQIYHQYC GAEGLQVWLL TPESEGLLRD
GLRQTQTETF FALSNEISQM LVQQLHIAFP VRAPEQAVLL VAQDLRSPLR TLLREEFYHV
PVLSFAEISN AAKVKVMGRF DLEDDLEALD NEHAA
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