| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1211 |
|---|
| Symbol | |
|---|
| ID | 3366705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1368029 |
|---|
| End bp | 1368601 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637651552 |
|---|
| Product | type III secretion protein HrpP |
|---|
| Protein accession | YP_234303 |
|---|
| Protein GI | 66044462 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.111608 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.541783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAC CGATCAAAAC CCCTGCCAAA GCGCCACCCG TGCCGAGTGC CCCGCCGGCC
ACCTCACGCG CCCTGCCTTC GCTGCGTCAA CCCGACAGGT CCGATGACCA GCCGCCAGCC
TTTGCCGGGG CGCCTCGCGG CGATGTACAG AAGGTTCGTT TCGCGCTGAA CCGTTCAGTC
ACCGACAGCC CGATGAGCGC CGACGGCATG TTCTTCTCGC AACTGCTGAT ACCGCAGGTA
GGTGAAGAGC CGGATCAGCA GGGCTTCGGA GGCAGCGGTG TGGCCTTCTC TGCACAATCC
GAAAACGTAC CGACGCAGTT GATCGACGAG CTGGCGCAGC GTTTGCCCGA TCAGCCGGAC
GGTCCGCTGG CCTTCAGCCT GCTCATGCCC AATCTGGGGA GCGTGCGGGT CAACGCCAGC
AAATCCGAAA ACCGCTGGAG CATTCAACTG GGCTTTGGCC GACGTGACGT TCTCAAGCGC
TTGCAGGGCC AGGTCGGCGC ATGCCGGGAC TCGCTGGCGC AGGCACTCGG GCAGGATGTC
GAGCTGGACA TGCATGAAGA CTTCACAGCA TGA
|
|---|
| Protein sequence | MTAPIKTPAK APPVPSAPPA TSRALPSLRQ PDRSDDQPPA FAGAPRGDVQ KVRFALNRSV
TDSPMSADGM FFSQLLIPQV GEEPDQQGFG GSGVAFSAQS ENVPTQLIDE LAQRLPDQPD
GPLAFSLLMP NLGSVRVNAS KSENRWSIQL GFGRRDVLKR LQGQVGACRD SLAQALGQDV
ELDMHEDFTA
|
|---|
| |