| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1208 |
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| Symbol | HrcR |
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| ID | 3366702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1366278 |
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| End bp | 1366931 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637651549 |
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| Product | type III secretion system protein |
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| Protein accession | YP_234300 |
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| Protein GI | 66044459 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.338753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.475096 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCATGG AGGGCATCAA CCCGATCATG CTGGCGCTGT TTCTCGGCTC GCTGTCGCTG
ATCCCGTTCC TGTTGATCGT CTGTACCGCC TTTCTGAAGA TCGCCATGAC GCTGCTGATC
ACCCGCAACG CGATCGGCGT TCAGCAAGTA CCGCCGAACA TGGCGTTGTA TGGCATCGCC
CTGGCCGCGA CGATGTTCGT CATGGCTCCG GTGGCGCATG ACATACAGCA GCGGGTCCAT
GAACACCCGC TGGAACTGAG CAACGCCGAC AAACTGCAGA GCAGCCTCAA AGTCGTCATC
GAGCCGCTGC AACGCTTCAT GACACGCAAC ACCGATCCGG ACGTCGTGGC CCACCTGCTG
GAAAATACCC AGCGCATGTG GCCCAAGGAA ATGGCCGATC AGGCCAGCAA AGACGATCTT
CTGCTGGCGA TCCCGGCCTT TGTGCTGTCG GAATTGCAGG CCGGTTTCGA GATCGGTTTT
CTGATCTATA TCCCCTTCAT CGTCATTGAC CTGATTGTCT CCAACCTGTT GCTGGCACTG
GGCATGCAGA TGGTCTCGCC GATGACACTG TCGCTGCCGC TCAAACTGCT GCTGTTCGTG
CTCGTATCGG GCTGGTCGCG TCTGCTCGAC AGCCTGTTCT ATTCCTACAT GTGA
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| Protein sequence | MIMEGINPIM LALFLGSLSL IPFLLIVCTA FLKIAMTLLI TRNAIGVQQV PPNMALYGIA
LAATMFVMAP VAHDIQQRVH EHPLELSNAD KLQSSLKVVI EPLQRFMTRN TDPDVVAHLL
ENTQRMWPKE MADQASKDDL LLAIPAFVLS ELQAGFEIGF LIYIPFIVID LIVSNLLLAL
GMQMVSPMTL SLPLKLLLFV LVSGWSRLLD SLFYSYM
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