| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1198 |
|---|
| Symbol | HrpF |
|---|
| ID | 3366692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1357142 |
|---|
| End bp | 1357366 |
|---|
| Gene Length | 225 bp |
|---|
| Protein Length | 74 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637651539 |
|---|
| Product | type III secretion protein HrpF |
|---|
| Protein accession | YP_234290 |
|---|
| Protein GI | 66044449 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0936579 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATT TCAAATCCCT GCAAAATAAC CTCGATTCCA CGCTCACCCG CGCGTTGTCC
GACGTGGATG ACGTGCTGGA CGGGGGCAAT GGGCATTTCA CCGCCGACGA CATCGATGCC
TTCAGTGAGG CGAGCCAGCA GGCTGCGGTC AGCTCCAACA TCGCTGATCA ATGCCAGCAG
GCTGGTTATA AAATGACCAA AAATGTCATC GATGGATTTC AGTGA
|
|---|
| Protein sequence | MINFKSLQNN LDSTLTRALS DVDDVLDGGN GHFTADDIDA FSEASQQAAV SSNIADQCQQ
AGYKMTKNVI DGFQ
|
|---|
| |