| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1156 |
|---|
| Symbol | |
|---|
| ID | 3366650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1306913 |
|---|
| End bp | 1308652 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637651497 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_234248 |
|---|
| Protein GI | 66044407 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01887] dipeptidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.606865 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGT CACTCAAAAA ACTGGCTGCC TCCACCTTGA TCCTGGCCAG TCTCTCGTCG
TTCGCCAGTC TGGCAAACGC CACTGTCACT GCACAACAGA GCGCCGTCAT CCTCAAGACG
TTCAGTGATA CGTCGGTAAA GGATTTCAGG CAGTTTCTGA ACAGTCTGGC CAACGCTGAT
GTGGTTAAAA CTGCCGATTT TGGCCCGGCC ATCAGTGCCT TTCTCGATAA CAAACCACTT
TCCGCAGCGC AACAAAACGA TATTCATCGC CTGCTCGGTC TGTATACCCG CATGAAGTAC
GGCAGCGCGG CGACTGAAAC CCTGCGTGAG CTGGTGGCGA TTCCCACGGT TCGTGTCGAC
GGCGTTGCCC AGCACGAAAA CCCGGCGTTC ATAAAGATTG CCGACAAGAT CAAGAGCCTT
GCCGAAGGCT TCGATCTGAA GTTTCGTAAC GTCGATAACC GTGTGTATGA AGTGTCGCTC
GACGGGGCCA GTGATGAAGT GGTGGGCATT CATGTGCATG CCGATGTTGT ACCGGTCACG
CTGGACAACT GGGTCTTGCC TGACGGCACT CGTCTGGACC CGTTCAAGGT GACGTTGATC
GGTGATCGCA TGTACGGGCG CGGTACCGAA GACGACAAGA ACGGTATTGT GGTGGCGCTC
TATGCCATGA AAGTCATCAA GGAAGAAAAA CTGCCGCTGG CCAGAAACTT CAAGCTGCTG
ATCGATACCA CGGAAGAAAC CGCCGGCGAC GCCATCCCTT ACTATTTTGA GCGTAACCCG
ACGCCTGCCT ACAACCTGGC GCTGGATGGC GGTTATCCCG TTGTGATCGC AGAAAAAGGT
TACGGCACGG TCATGGCCAG CTTTGCCCGA CGCCAGGCAG AAGGCGAGGG TGCCGAGATC
GTTTCAATGA CCGGGGGTAT GGCCACCAAT CAGATTCCAT CGAAGTCGGT CGCCACTCTG
CTGACCGACA AACCTGCCGA GCTTGCTGCC AGTCTGCAAC AGGCCGGAGC CGAGTACGTG
AAAAGCAATG GCGGTGACTT CGAGGTCGAT GCCAGGGTCG ACGGCAAGGA CGTCAAACTG
ACCGTGACCG GCGTATCCGC ACACTCATCG GCGCCCCAGT CCGGGGTCAA TCCGGTCGCG
AGGATGCTGG ATTTCATCAA CAGCCTGCAG GGCAAGGTGG CGCTCAAACA TAACCAGATC
ACCGACGCTG CTCGCTATGC CGCCGACAAC TGGGGGCTCG ATTACCTGGG CAGCAAGTTG
GGCGTCGGGT TCTCCGACGA CTTCATGGGG CCTCTGACCG CATCACTGAC GTACGTCGCA
ATGGATGAAA AGGCATTCAA GCTTGCGGTC AATCTGCGCG TGCCGAAGGG CAAGTCCCCA
CAGGTGCTCA AATCCGAAAT CGCCGAAAAG CTGGCGGCCT GGAGTACGAA AACCGCGATC
AAGCCAGCGT TCGACTATTC CATTGCCGAG CCGATGTACC GCAATCCCGA GGGTGAGTGG
GTCAAGGCGC TGCTCGCTGT CGCCAGTGAA AATCTCGGTA TGGAACACAC CTTTGGCACG
TCGGCTGGCG CGACGTCGGT CCATTCATTA CCCAACGGTG TGCAGTTCGG TCTGGCGAGA
CCCGAAGTCA AATACACCGG TCATACGGAT AACGAGTTCA AGACCACCGG GCAGTTCTTG
CTGGATCTGC AGATCGTCAC CGAGATGATG GGGCGTATCG GACAACTGCC AAAGCTCTGA
|
|---|
| Protein sequence | MNLSLKKLAA STLILASLSS FASLANATVT AQQSAVILKT FSDTSVKDFR QFLNSLANAD
VVKTADFGPA ISAFLDNKPL SAAQQNDIHR LLGLYTRMKY GSAATETLRE LVAIPTVRVD
GVAQHENPAF IKIADKIKSL AEGFDLKFRN VDNRVYEVSL DGASDEVVGI HVHADVVPVT
LDNWVLPDGT RLDPFKVTLI GDRMYGRGTE DDKNGIVVAL YAMKVIKEEK LPLARNFKLL
IDTTEETAGD AIPYYFERNP TPAYNLALDG GYPVVIAEKG YGTVMASFAR RQAEGEGAEI
VSMTGGMATN QIPSKSVATL LTDKPAELAA SLQQAGAEYV KSNGGDFEVD ARVDGKDVKL
TVTGVSAHSS APQSGVNPVA RMLDFINSLQ GKVALKHNQI TDAARYAADN WGLDYLGSKL
GVGFSDDFMG PLTASLTYVA MDEKAFKLAV NLRVPKGKSP QVLKSEIAEK LAAWSTKTAI
KPAFDYSIAE PMYRNPEGEW VKALLAVASE NLGMEHTFGT SAGATSVHSL PNGVQFGLAR
PEVKYTGHTD NEFKTTGQFL LDLQIVTEMM GRIGQLPKL
|
|---|
| |