| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1129 |
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| Symbol | |
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| ID | 3366623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1280128 |
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| End bp | 1281294 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637651470 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_234221 |
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| Protein GI | 66044380 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0780076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAGAA AGACCCTGAC CGTCACCGCC GTCGTCCTGG TGATCGCCTG TGCGGCGATT
GCCGGCTGGA AACTGACACG CCCGGCCGCA CTCCCCAAAA ATGCCGCTGC CGCTGTGCCC
GTCAAAGTGA TCACGGTCAG CCTTGAAGAC GTACCGCGTT TCGTCACAGG GATCGGATCG
GTGCTGTCGC TGCAAAGCGT GGTGATCCGC CCCCAGGTGG ATGGGGTGCT GACGCGTGTG
TTGGTCAAGG AAGGTCAGCA GGTCAAGGCC GGGGACCTGC TGGCAACGCT GGATGACCGC
TCTATCCGGG CCGCGCTGGA GCAGGCGCGT GCCCAGTTGG CGCAGAGCAA GGCGCAGCTG
GACGTCGCGC AACTGGACCT CAAGCGCTAT CGCCAGCTCA CCCAGGACAA TGGCATCTCG
CGGCAGACAT TCGACCAACA GCAGGCAATG GTCAGGCAAC TCGAAGCCAC GGCGAAAGGC
AACGAAGCGA GCATCAACGC CTCACAGGTG CAGTTGTCCT ACACCCAGAT TCGCTCGCCG
GTGACGGGAC GGGTCGGTAT TCGCAACGTC GATGAAGGCA ACTTCCTGCG CGTCAGCGAT
GCTGCAGGGC TGTTTTCAGT GACCCAGATC GACCCGATTG CCGTGGAGTT TTCCCTGCCA
CAGCAAATGT TGCCGACCCT GCAGGGGCTG ATTGCCGAAC GTAACGCTGC GACCGTCAAG
GCGTATCAGG GCGACGGCGC GGCCAACGGC CTGCTGCTGG GTGAAGGCAC GCTTTCATTG
ATCGACAATC AGGTGTCGGC AAGCACCGGT ACGATCCGCG CCAAGGCGCA ATTCAAAAAC
CCCGGCGAGC AACTCTGGCC GGGGCAACTG GTGACCGTGA AGATCCAGAC CGGTATCGAA
CTCAACTCGC TGAAAGTGCC GCCACAAGTG GTGCAGCGCG GCGTTGACCT GCACTTCGTC
TATCGGCTCA CTGCCGATAA CAAGGTAGAA GTCGTACCCG TCAAAGTGCT CTATCAGGAC
AGCGAACAGA CATTGATCAG CGGGCCGCGT GCTGGCGATG TACTGGTCAG CGACGGCCAG
TCGCGGCTAC GCCCCGGCGC AACGGTCGAA GTGATCACCG CGCCTGCTGC GGATGTCGCG
AGCGCGCAAG TGGAGCCCGC ACGATGA
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| Protein sequence | MRRKTLTVTA VVLVIACAAI AGWKLTRPAA LPKNAAAAVP VKVITVSLED VPRFVTGIGS
VLSLQSVVIR PQVDGVLTRV LVKEGQQVKA GDLLATLDDR SIRAALEQAR AQLAQSKAQL
DVAQLDLKRY RQLTQDNGIS RQTFDQQQAM VRQLEATAKG NEASINASQV QLSYTQIRSP
VTGRVGIRNV DEGNFLRVSD AAGLFSVTQI DPIAVEFSLP QQMLPTLQGL IAERNAATVK
AYQGDGAANG LLLGEGTLSL IDNQVSASTG TIRAKAQFKN PGEQLWPGQL VTVKIQTGIE
LNSLKVPPQV VQRGVDLHFV YRLTADNKVE VVPVKVLYQD SEQTLISGPR AGDVLVSDGQ
SRLRPGATVE VITAPAADVA SAQVEPAR
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