| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1125 |
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| Symbol | |
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| ID | 3366619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1273249 |
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| End bp | 1274778 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637651466 |
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| Product | GGDEF |
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| Protein accession | YP_234217 |
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| Protein GI | 66044376 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.394023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.376452 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGTGT TTGCGTTTTC TCGGCAAGCC CGGCTCAGAT GGACCCGTCC GGAGCTGATA
TTGATTTTCG GCAGCTCGGT TTCAATGCTC GCCATTCTGG CGATCGTGGC GTCTCTACTG
GCCCGGGAGC GCGACGACGC AGCACAGACA GCAGCACGTG CAGCATCCAA TATCGTGCGT
TTGATCGATG CCGACGTCAT GCGTAACGCA GAACTTTACG ACTCTTCCCT GCAGGGTATG
ATCAGTGCGT GGCAGCGTCC CGACCTTCAG CAACTGTCGC CTGAACTGCG CCAACTTGTA
CTGTTTGATC GCGCCACTGC CGCCTCTTAC AAGGGCGATC TGGTATTGCT CGATAACCGC
GGCGAGATAT TGGCTGATTC TTTATCTGTC ATTCCTCGAC AGGACAACTT TTCTGACCGC
GCCTATTTCA AGGACCATGC AACCGACCGC TCTTTGACGC TACATGTCAG CGCGCCGTAC
AAGACACGCT GGGGCTACAA GGACTGGTGC ATCAGTTTCA GCCGTCGTAT ATCAGGACCC
GACGGTGAGT TCATGGGCAT CGTGAGTGCG GCGATGCGCC TGGTGTATTT CAAGCACCTG
TTCATGAGCC AGAACCTGGG CAGTGAAAGC AGCATCAACC TGATCAATAC CTCGGGCATT
CTGATCGTTC GCTACCCGGA AATGGAAGGC CAGGATCTGA TCGGCAAGGA TTACAGCCAC
AGCCCCAACT TTCAGCGCAT CCTTCAGGAA GGCGATGGCA GCTTCGCCGC GATGTCGACG
CAGTTGAACG CTCGTCGGCT GTATACCTTT TCCCGAGTCG GCAACCTGCC GCTGATCGTC
GTCATCGGGC AATCCGAGGA TGAGGTGTAT GCCGTCTGGC GGCGCAATGC CTGGCTGGTC
GGCTCGGCCA CCAGCGTTTT GTGTCTGGGC ATTCTGTGGC TGACCTGGCT GCTGTGTCGC
GAACTGCGAA GACGCCACCG TGCCGAAGAT GCGCTGGCCA GCCTGGCCGC GACCGATGGT
CTGACCGGGC TCGATAACCG CCGTCAGCTT GACGAAGCCA TGGAGATCGA ATGGGCGCGA
GCGCAACGCT CTGGCAAGCC GCTGTCATTG CTGATGATCG ACGTAGACCA TTTCAAGGCA
TTCAATGAGC GTCATGGCCA TCAGGGCGGG GACGAGGCGC TGCGTCTGAT TGCGCAGACC
ATCTCATACT GCATCCGCCG TCCGGGCGAC CGGGTGGCAC GCTATGGCGG CGAAGAGTTC
GTGGTGGTGC TGCCGGAAAC AGATTTGCCG GGCGCCATGC TGATCGCGGA AAAAATCCGC
AAGGCCGCAG AGTCACTGCC GCTGTTCAGG AATGCCGAGC ATCCCATCAC CGTGAGCATC
GGGGTCGCTT CGGAGGTCGT TCGCCAGGGC GACAAACTGG AGGCATTTTT CGGGGTAGCC
GACAAGGCGC TGTATCAGGC CAAGGACAAT GGACGTAACC GGGTCGAGTA CCGCAGTTCG
GTTGCCAGAA AGGTGACCGA TCAGGTTTGA
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| Protein sequence | MMVFAFSRQA RLRWTRPELI LIFGSSVSML AILAIVASLL ARERDDAAQT AARAASNIVR
LIDADVMRNA ELYDSSLQGM ISAWQRPDLQ QLSPELRQLV LFDRATAASY KGDLVLLDNR
GEILADSLSV IPRQDNFSDR AYFKDHATDR SLTLHVSAPY KTRWGYKDWC ISFSRRISGP
DGEFMGIVSA AMRLVYFKHL FMSQNLGSES SINLINTSGI LIVRYPEMEG QDLIGKDYSH
SPNFQRILQE GDGSFAAMST QLNARRLYTF SRVGNLPLIV VIGQSEDEVY AVWRRNAWLV
GSATSVLCLG ILWLTWLLCR ELRRRHRAED ALASLAATDG LTGLDNRRQL DEAMEIEWAR
AQRSGKPLSL LMIDVDHFKA FNERHGHQGG DEALRLIAQT ISYCIRRPGD RVARYGGEEF
VVVLPETDLP GAMLIAEKIR KAAESLPLFR NAEHPITVSI GVASEVVRQG DKLEAFFGVA
DKALYQAKDN GRNRVEYRSS VARKVTDQV
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