Gene Psyr_1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1117 
Symbol 
ID3366611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1265737 
End bp1267098 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content57% 
IMG OID637651458 
Productcarbohydrate-selective porin OprB 
Protein accessionYP_234209 
Protein GI66044368 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3659] Carbohydrate-selective porin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00415727 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.584211 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAGA TCAACAAAGG TAAATCGCTT TCCCGGCTCC AGTTGGTATG CAAGCTGTCG 
GCGTTGGGTG CAATGGGTCT GGCCGGCAGC GTTCACGCCG CCGAGCCATT TGCCGCTGAT
TCACCCTGGA TGACGGGTGA CTGGGGTGGC AAGCGCACCG AGTTGCTGGA CAAGGGTTAT
GACTTCTCGC TGGAATACGT TTCCGAGATG GCCAGCAACC TGAAGGGCGG CTACAACGAT
GACACCACCG GTCGTTACAG CGACCAGTTC GCGCTGGGCA TGAAAGTCGA TTTGCAGAAG
GTGCTGGGCT GGCAAGACGC GGAGTTCAAG CTGGCAATCA CCGAACGTAG CGGTCGCAAT
ATCTCCAATG ACCGTATCGG CGATCCTCGC GCCGGTACAC TCAGCTCCTC CCAGGAAGTC
TGGGGCCGTG GTCAGACCTG GCGCCTGACG CAGATGTGGA TCAAGCAGAA GTACTTCGAC
GGCGCGCTGG ACGTCAAGGC CGGTCGCTTT GGTCCGGGCG AAGACTTCAA CAGCTTCCCG
TGCGACTTCC AGAACCTGTC GTTCTGCGGC TCGCAGGTCG GTAACTACGT TAATACCTGG
TACAACTGGC CTATCAGCCA GTGGGCGTTG CGCATCAAGT ACAACATCAC GCCTGAAGTC
TATGCCCAGG TTGGCGTGTA CGAGCAGAAC CCGTCCAACC TGGAAACAGG CAACGGCTTC
AAACTCAGCG GCAGTGGCAC CGAAGGCATG ATTCTGCCGG TCGAACTGGT CTGGACTCCG
TCCTTCAACT CGTTGCCCGG TGAGTACCGT GTCGGTTACT ACAAGAGCAC GCCAAACGCC
AACGATGTCT ATGAAGACGT GAACGGTCAG CCGCAGGCCT TGACTGGCGC AGCGTTCAAG
TCACACAGCA GCAAGCATGG CTGGTGGGTC GTGGCTCAGC AACAACTGAC CACTCATGAC
GGCGACGCCT CGCGCGGCCT GAGCATCTTT GCCAACGCCA CCGTGCATGA CAAGGCGACC
AACTTCGTCG ACAACTACCA GCAGATCGGT TTCACGTACA AAGGTCCGTT CAACTCGCGT
CCGAAAGATG ACATCGGTAT CGGTTTTGCC CGTATCCACG TCAACGACGA TGTGCAGGAT
CGCGTGCGTC TGGCCAACCA GATCAGCGGT ATCAACGACT ACGACAACCC TGGCTTTCTG
CCGGTTCAGA GCACTGAGTA CAACTCTGAA ATCTACTACG GCTTCCATGT CACCAACTGG
CTGACCGTGC GTCCCAACCT GCAGTACATC AAGCATCCTG GTGGCGTAGA TCAGGTTGAT
GATGCGCTGG TAGCGGGCAT CAAGATCCAG TCGAAGTTCT GA
 
Protein sequence
MKKINKGKSL SRLQLVCKLS ALGAMGLAGS VHAAEPFAAD SPWMTGDWGG KRTELLDKGY 
DFSLEYVSEM ASNLKGGYND DTTGRYSDQF ALGMKVDLQK VLGWQDAEFK LAITERSGRN
ISNDRIGDPR AGTLSSSQEV WGRGQTWRLT QMWIKQKYFD GALDVKAGRF GPGEDFNSFP
CDFQNLSFCG SQVGNYVNTW YNWPISQWAL RIKYNITPEV YAQVGVYEQN PSNLETGNGF
KLSGSGTEGM ILPVELVWTP SFNSLPGEYR VGYYKSTPNA NDVYEDVNGQ PQALTGAAFK
SHSSKHGWWV VAQQQLTTHD GDASRGLSIF ANATVHDKAT NFVDNYQQIG FTYKGPFNSR
PKDDIGIGFA RIHVNDDVQD RVRLANQISG INDYDNPGFL PVQSTEYNSE IYYGFHVTNW
LTVRPNLQYI KHPGGVDQVD DALVAGIKIQ SKF