Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1117 |
Symbol | |
ID | 3366611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1265737 |
End bp | 1267098 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637651458 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_234209 |
Protein GI | 66044368 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00415727 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.584211 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGA TCAACAAAGG TAAATCGCTT TCCCGGCTCC AGTTGGTATG CAAGCTGTCG GCGTTGGGTG CAATGGGTCT GGCCGGCAGC GTTCACGCCG CCGAGCCATT TGCCGCTGAT TCACCCTGGA TGACGGGTGA CTGGGGTGGC AAGCGCACCG AGTTGCTGGA CAAGGGTTAT GACTTCTCGC TGGAATACGT TTCCGAGATG GCCAGCAACC TGAAGGGCGG CTACAACGAT GACACCACCG GTCGTTACAG CGACCAGTTC GCGCTGGGCA TGAAAGTCGA TTTGCAGAAG GTGCTGGGCT GGCAAGACGC GGAGTTCAAG CTGGCAATCA CCGAACGTAG CGGTCGCAAT ATCTCCAATG ACCGTATCGG CGATCCTCGC GCCGGTACAC TCAGCTCCTC CCAGGAAGTC TGGGGCCGTG GTCAGACCTG GCGCCTGACG CAGATGTGGA TCAAGCAGAA GTACTTCGAC GGCGCGCTGG ACGTCAAGGC CGGTCGCTTT GGTCCGGGCG AAGACTTCAA CAGCTTCCCG TGCGACTTCC AGAACCTGTC GTTCTGCGGC TCGCAGGTCG GTAACTACGT TAATACCTGG TACAACTGGC CTATCAGCCA GTGGGCGTTG CGCATCAAGT ACAACATCAC GCCTGAAGTC TATGCCCAGG TTGGCGTGTA CGAGCAGAAC CCGTCCAACC TGGAAACAGG CAACGGCTTC AAACTCAGCG GCAGTGGCAC CGAAGGCATG ATTCTGCCGG TCGAACTGGT CTGGACTCCG TCCTTCAACT CGTTGCCCGG TGAGTACCGT GTCGGTTACT ACAAGAGCAC GCCAAACGCC AACGATGTCT ATGAAGACGT GAACGGTCAG CCGCAGGCCT TGACTGGCGC AGCGTTCAAG TCACACAGCA GCAAGCATGG CTGGTGGGTC GTGGCTCAGC AACAACTGAC CACTCATGAC GGCGACGCCT CGCGCGGCCT GAGCATCTTT GCCAACGCCA CCGTGCATGA CAAGGCGACC AACTTCGTCG ACAACTACCA GCAGATCGGT TTCACGTACA AAGGTCCGTT CAACTCGCGT CCGAAAGATG ACATCGGTAT CGGTTTTGCC CGTATCCACG TCAACGACGA TGTGCAGGAT CGCGTGCGTC TGGCCAACCA GATCAGCGGT ATCAACGACT ACGACAACCC TGGCTTTCTG CCGGTTCAGA GCACTGAGTA CAACTCTGAA ATCTACTACG GCTTCCATGT CACCAACTGG CTGACCGTGC GTCCCAACCT GCAGTACATC AAGCATCCTG GTGGCGTAGA TCAGGTTGAT GATGCGCTGG TAGCGGGCAT CAAGATCCAG TCGAAGTTCT GA
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Protein sequence | MKKINKGKSL SRLQLVCKLS ALGAMGLAGS VHAAEPFAAD SPWMTGDWGG KRTELLDKGY DFSLEYVSEM ASNLKGGYND DTTGRYSDQF ALGMKVDLQK VLGWQDAEFK LAITERSGRN ISNDRIGDPR AGTLSSSQEV WGRGQTWRLT QMWIKQKYFD GALDVKAGRF GPGEDFNSFP CDFQNLSFCG SQVGNYVNTW YNWPISQWAL RIKYNITPEV YAQVGVYEQN PSNLETGNGF KLSGSGTEGM ILPVELVWTP SFNSLPGEYR VGYYKSTPNA NDVYEDVNGQ PQALTGAAFK SHSSKHGWWV VAQQQLTTHD GDASRGLSIF ANATVHDKAT NFVDNYQQIG FTYKGPFNSR PKDDIGIGFA RIHVNDDVQD RVRLANQISG INDYDNPGFL PVQSTEYNSE IYYGFHVTNW LTVRPNLQYI KHPGGVDQVD DALVAGIKIQ SKF
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