| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1114 |
|---|
| Symbol | |
|---|
| ID | 3366608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1262693 |
|---|
| End bp | 1263601 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637651455 |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_234206 |
|---|
| Protein GI | 66044365 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.549163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCTG TCGCTGCGAA CAGCAAAGCC TCGCCAATGG ATGCGCTGCA ACGCTGGCTA
CCAAAACTGG TGCTGGCCCC CAGCATGTTC ATCGTACTGG TGGGGTTCTA CGGCTACATC
CTCTGGACAT TCGCACTGTC GTTCACCAAC TCGACGTTCC TGCCTTCCTA TAAATGGGTC
GGCCTGGCGC AATACGCGCG TCTGATGGAC AACGATCGCT GGTGGGTGGC AAGCAAGAAC
CTCGCGGTCT TTGGCGGGAT GTTCATTGCA ATCAGCCTGG TGATCGGGGT CCTGCTGGCC
GTCCTGCTGG ACCAGCGGAT TCGTCGCGAG GGCATGATTC GTACTATCTA CCTGTACCCG
ATGGCGCTGT CGATGATCGT CACCGGTACT GCCTGGAAAT GGTTGCTCAA CCCTGGCCTG
GGCCTGGACA AGATGTTGCG CGACTGGGGC TGGGAAGGTT TCCGTTTCGA CTGGCTGATT
GATCAGGACC GCGTTGTGTA CTGCCTGGTC ATCGCAGCGG TATGGCAGTC CTCGGGCTTC
GTCATGGCGT TGTTTCTGGC GGGGCTGCGT GGCGTCGATC AGTCGATCAT TCGCGCGGCG
CAGATGGATG GCGCAAGTCT GCCGATGATC TACTGGCGCG TCGTGCTGCC AAGCCTGCGT
CCGGTATTCT TCAGTGCCGT GATGATTCTC GCGCACATTG CGATCAAGAG TTTCGACCTG
GTAGCCGCGA TGACCGCCGG TGGCCCCGGT TACTCATCCG ACCTGCCGGC GATGTTCATG
TATTCCTTCA CCTTCAGCCG CGGCCAGATG GGCATGGGCT CTGCCAGTGC CATTCTGATG
CTCGGCGCGA TCCTGGCGAT TCTGGTGCCG TATCTGTATT CCGAGCTGAG GACCAAACGC
CATGACTAG
|
|---|
| Protein sequence | MSSVAANSKA SPMDALQRWL PKLVLAPSMF IVLVGFYGYI LWTFALSFTN STFLPSYKWV
GLAQYARLMD NDRWWVASKN LAVFGGMFIA ISLVIGVLLA VLLDQRIRRE GMIRTIYLYP
MALSMIVTGT AWKWLLNPGL GLDKMLRDWG WEGFRFDWLI DQDRVVYCLV IAAVWQSSGF
VMALFLAGLR GVDQSIIRAA QMDGASLPMI YWRVVLPSLR PVFFSAVMIL AHIAIKSFDL
VAAMTAGGPG YSSDLPAMFM YSFTFSRGQM GMGSASAILM LGAILAILVP YLYSELRTKR
HD
|
|---|
| |