| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1045 |
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| Symbol | |
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| ID | 3366539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 1180342 |
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| End bp | 1181826 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637651388 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_234139 |
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| Protein GI | 66044298 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.44263 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCGTC GCATCATCAG AGGGCTCTGG CCCGTCGGTA TTCTGGCTTT TACGCTGGTC
ATCAGCGGCT GTATCGGAAC ACATGGAATC AAATCGCAGG GCAGTCTCCT GCACGCTGAC
AGCCTGGTCA CCGATCAGGC GATTCAGAGC GCTGCTCTCG ACGCCCATTG GCCCGCAGCG
CAATGGTGGC GTGCCTACGG CGACGCGCAA CTGGACTGCT GGGTCGAGAT GGCGACGCTG
GGCAGCCCGA GTCTGGCACT TGCTGCGGCT CGTGTGCGCC AGGCAAGGGC GATGGCGCAG
GTCGCCGAGT CTGCCGAGTC CGTGCAGCTG CAGGGCAACG CCAGCCTGAT GCGTCACGAC
TGGCCCGAGG ATCAGTTTTA TGGTCCCGGA GCGCTGGCCG ATACTCGCAC CTGGGACAAC
AATGCGTCGC TGGGCTTGAG CTACGCGCTG GACCTGTGGG GACGTGAACG CAACGCCAGC
GAGCAGGCCG TTGATCTGGC GCATGTGAGT GCTGCCGAGC AGCGTCAGGC GCAGCTCGAA
TTGCAGGAAA ACGTGGTCCG CGCCTATATC CAGCTGTCCC TCGACTACGC CCGACTGGAT
ATCGCCGAAG CGGCCCTGGC CCAGCAGCAA CAGATACTCG ACCTGGCGCA GCGCCGCCTC
AAGGGCGGGA TCGGCACGCA CTTCGACGTC AGTCAGGCCG AAACCCCGCT GCCTGAGGCG
CATCGGCAGA TCGACGCGCT GCAAGAGGCC ATTGCCCTGA GTCGCAACCA GTTGGCCGCG
CTGGCAGGCA AGGGGCCGGG GCAGGGCGCG GCCTTGCAGC GGCCTGCGCT GTCGTTGCAT
ACCGCACTGA CATTGCCCTC GGCACTGCCT GCCGAACTGC TGGGTCAGCG ACCTGACGTG
GTGGCTGCGC GCTGGCAGGT GGCGGCGCAG GCACGCGGTA TCGACGTTGC ACATGGCGGC
TTTTATCCCA ATGTCGATCT GGTCGGCAGC CTGAGTTACA TGGCCACGGG CGGCGGCGTG
CTGGAGTTTC TGACCGGCAG CAAGCTGGGC TACAAGGTCG GGCCGGCCAT CAGCCTGCCG
ATCTTCGACG CTGGACGCTT GCGGGCGGAG CTGGGGCGGG CGTCGGCTGC TTATGATCAG
GCCGTGGCGC ATTACAACCA GACGCTGGTG ATGGCGCTGA AAAGTGTCTC CGACCAGTTG
ATTCGGCGTG CCTCGATGGA CAAGCAGCAG GCACTCGCCG CCGAGTCGGT GGCGTCGGCG
CAAAAGACCT ACGACATTGC CCTGATCGCC TGGCAGCGCG GCCTGACCGA TTACCTGAAC
GTGCTCAATG CGCGCACGCA ACTGTTCCGC CAGCAACAGG TTCAGCAACA GGTCGAGGCT
GCGCGACTGG AAGCCTACGC CGGGCTGGTG GTGGCGCTGG GCGGTGACGG GGATGGCAAT
GGTCATTCCG CACACACCGC CGCCGAGTCC GGGGGCGGGC AATGA
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| Protein sequence | MPRRIIRGLW PVGILAFTLV ISGCIGTHGI KSQGSLLHAD SLVTDQAIQS AALDAHWPAA
QWWRAYGDAQ LDCWVEMATL GSPSLALAAA RVRQARAMAQ VAESAESVQL QGNASLMRHD
WPEDQFYGPG ALADTRTWDN NASLGLSYAL DLWGRERNAS EQAVDLAHVS AAEQRQAQLE
LQENVVRAYI QLSLDYARLD IAEAALAQQQ QILDLAQRRL KGGIGTHFDV SQAETPLPEA
HRQIDALQEA IALSRNQLAA LAGKGPGQGA ALQRPALSLH TALTLPSALP AELLGQRPDV
VAARWQVAAQ ARGIDVAHGG FYPNVDLVGS LSYMATGGGV LEFLTGSKLG YKVGPAISLP
IFDAGRLRAE LGRASAAYDQ AVAHYNQTLV MALKSVSDQL IRRASMDKQQ ALAAESVASA
QKTYDIALIA WQRGLTDYLN VLNARTQLFR QQQVQQQVEA ARLEAYAGLV VALGGDGDGN
GHSAHTAAES GGGQ
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