| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1041 |
|---|
| Symbol | |
|---|
| ID | 3366535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1176188 |
|---|
| End bp | 1177063 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637651384 |
|---|
| Product | helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisation |
|---|
| Protein accession | YP_234135 |
|---|
| Protein GI | 66044294 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.29946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCA TTGAATCCAT CCAGGTCTTT CAGGCCCTGA ACAGTTCACC CAATGCCAAT
CTGGAGCAGA GCGCGCCGCT GGGCGACGGG CTGGTGGCGG CGTTGTGGAA CAATCGGCAC
GACTCGCAGG AATATCACGC ACCGACCCAC CATACCCTGT CGTGCTATAT CGAGGACGGT
ACCGGGACCT TTCGCCGCGG CAGACCCGAC CAGAAAGGCG CGCCGGGCAA GCTGTGCGTA
TTACCCGCCG GTCATGAGTC CGCCTGGGTA GTGAACGGCG AGATCCGCCT GGCGCATCTG
TATTTCAGCC CGGAACAGTT TGCACTGGGC TGCGTGACCC TGCTGGATCG CGAGCCGCGC
GAGATGCAGC TGCGGGAAAA CACCTTTCTG GAAGACCCCG CACAAGCCGC ACGCTTCCGG
CAGCTGATTC GCCTGAACTG GGCAGAACCC GGCGAGCGCC TGCTGACCAG CAGCCTGGCG
CACGAGATGG TCAGCCATGC GCTGCTCAAT CAGGCAGGCC TGCGCGAAGG GCTGCGCTTG
AAAGGCGGCC TGGCGCCGCA TCTGCGCCGG TATCTGGTGG ACTTCATCGA AATGCATCTC
GCCGACCCGC TGAGCCTTGG CCAACTGGCC GGCCTGTGTG CGCTGTCGGA ATACCACTTC
GCGCGCATGT TTCGCGAAAG CTTCGGTTTG CCGCCGCACC AGTACCTGCT GGCGCGACGC
ATCGAGCAGG CGCGCCAATT GCTGCGCAGT ACCGGCAAGC CACTGGGCGA AATCGCGCTG
GCTTGCGGGT TCGCCAGCGC CAGCCATTTC AGCAACCGTT TTCGTCAGGC CACGGGGGCG
ACACCGGGTG AGTACAGAAC GGCTTTAGGC CAATAG
|
|---|
| Protein sequence | MSAIESIQVF QALNSSPNAN LEQSAPLGDG LVAALWNNRH DSQEYHAPTH HTLSCYIEDG
TGTFRRGRPD QKGAPGKLCV LPAGHESAWV VNGEIRLAHL YFSPEQFALG CVTLLDREPR
EMQLRENTFL EDPAQAARFR QLIRLNWAEP GERLLTSSLA HEMVSHALLN QAGLREGLRL
KGGLAPHLRR YLVDFIEMHL ADPLSLGQLA GLCALSEYHF ARMFRESFGL PPHQYLLARR
IEQARQLLRS TGKPLGEIAL ACGFASASHF SNRFRQATGA TPGEYRTALG Q
|
|---|
| |