| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1038 |
|---|
| Symbol | |
|---|
| ID | 3366532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1171497 |
|---|
| End bp | 1173845 |
|---|
| Gene Length | 2349 bp |
|---|
| Protein Length | 782 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637651381 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_234132 |
|---|
| Protein GI | 66044291 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.85232 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCCC GCCCTACCCA ACTTTCGCCG CTGGTGCGTA CATTGCGCCA TGTCATTTTC
GGCGCCAGCC TCTCGGTCGG CAGCCTGTCG ATGGTGCAGG CCGCCGAGGT CGCACCCAAG
GCGTATCACA TTGCGCCAAG CGAGCTTGAA GCGGCGTTGA ACCAGTTCGG TCGTGAGTCC
GGCGTGCTGA TTTCCTATGG TTCGCAGATT ACCAGCGGCC TGAAAAGCCG TGGCCTGGAA
GGTCAGTACA CGCCCGAGCA GGGCCTGAAT GCCTTGCTCG AAGGCACCGG CCTGCAGGCC
ATGGCCGATG GCAATAACGG CTTCACCCTG CAACCGGCCA ATACCGCTGG CGCGCCGATC
GAGCTGGGTG TCTCCACGGT GGTCGGTGAC TGGCTGGGCG CTGCGCAGCA AACCAACGTT
TTCGAGCATC CGGGCGCGCG TGACGTGATT CGTCGTGAGG AATTCGAGCG GGTCGGTGCG
ACATCGGCGC GTGAAGTGCT CAATCGCATT CCGGGCGTCA ATGCGCCGGA CAACAACGGC
ACCGGCAGCC ATGACATGGC GCTGAACTTC GGCATTCGCG GCCTCAATCC ACGCCTGGCG
TCGCGCTCCA CCGTGCTGAT GGACGGCATT CCGGTACCAT TCGCGCCCTA CGGCCAGCCG
CAACTGTCGT TTGCGCCGAT CAGCATGGGC AACATGGACG CAGTCGACGT GGTGCGTGGC
GGTGGTGCAG TGCGTTACGG TCCGCAGAAC GTGGGCGGCA TCGTCAACTT CGTGACCCGC
GCGATCCCCG ATACCCCGAC GCTCAAGGGC GGCATCCAGA CCGAGACCAG CCCGTCGTCC
AGCCACGACG GCTTCAAGAC CACCGGCAAC CTGCTGGCAG GCGGTACCGC GGACAACGGC
CTGGGCGGCG CGATTCTGTA TTCCGGCGTG CGCGGCGGCG ACTGGCGCGA GCACAGCGAC
ACCGAAATCG ACGACCTGAT TCTCAAGGGC AAATACCAGA TCGACGACGC CAACAGCCTC
AACGCCATGG CGCAGTACTA CGATGGCGAA GCACAGATGC CTGGAGGCCT CAGCGTCGCG
GACTACGATG CCGACCCGTA CCAGTCGACA CGCCTGAAGG ACAAGTTCTG GGGCCGTCGC
ACCCTGTTCA ACTTCGGCTA TCGCTATGAG CAGGACGCGC GCGTCTTCAC CGCCAACACG
TTCTTCACCA AGACCTTGCG CAGCGGCTAT CTGGATCAGG GCAGCTTCGT TTCCCTGTCG
CCCCGCGAAT ACTGGGTGCG CGGCCTGGAA ACACGCTTCT CGCAAGGCTT TGCGCTGGGC
GAGACCTGGC ATGAAGTCGG CGTTGGCTAC CGCTACGTCA ACGAGGCCGG TCATGAGTTG
CGCTATCGCG AACCGGTGAC GGGCGAGCTG CCAACCACCG CCAGTCGCAA CGACCGCGAC
ACACGCGGCG CGACCGAAGC GCATGCGTTC TACATCGACG ACCGCATCGA TATCGGCAAG
TGGACCATCA CGCCGGGCAT TCGCTACGAG ATGATCGACA CCGCGCAGAA CAACAACCTG
ACCAACGCCC GCTACCAGGG CGACTACAGC ACCGCACTGC CCGCGTTGAA CGTGCTTTAC
CACCTGACCG ACACCTGGAA CCTGTACGCC AACACCGAAG GCTCGTTCGG CAGTGTGCAG
TACAGCCAGA TGCCCAACCG CGTCACCGGC GATGAAGTCA AACCGGAAAA AGCCCGCACC
TGGGAACTGG GCACACGCTA CGACAACGGC AACCTGCGGG CCGAGATCGG CGCGTTCTTG
ATCAATTTCG ACAACCAGTA CGACAGCAAC CAGACCAATG ACACGGTTAT CGCACGCGGC
GAGACGCGTC ATCAGGGCAT CGAGACCAGC GTCAACTATG CGCTGGAGGG CCTGAGCCCG
GTGCTGGCCG GCTACGATGT CTACGCGACC TACGCCTTCG TCGACGCCAC GATTCGCGAA
GACGGCCCGA ACAAGGGCAA TCGCGTGCCG TTCTCGTCAA AGCACAAGGG AACCATGGGC
GTCAGCTACA CCGAAGGGCC GTGGAAGCTT AATTTCGACA GCGCCTTCCA GAGCGACCAG
TTTGCCGACA ACGCCAATAC CTCGACTGAA AGCGCCGATG GCAGCACCGG CAAGATCCCT
GGGTACATGC TGTTCAGCAC CCGCGCCAAC TACGATTTCG GCCCGCAACT GTCTGACCTC
AACGTAGCGG TCGGGATGAA GAACATCTTC AACCGCCAGT ACTACACCCG CTCGTTCGAC
GACAACAACC GCGGCAAATA CGTCGGCGAA CCACGCACGG TGTACGTACA GACATCGGTC
GCGTTCTAG
|
|---|
| Protein sequence | MSARPTQLSP LVRTLRHVIF GASLSVGSLS MVQAAEVAPK AYHIAPSELE AALNQFGRES
GVLISYGSQI TSGLKSRGLE GQYTPEQGLN ALLEGTGLQA MADGNNGFTL QPANTAGAPI
ELGVSTVVGD WLGAAQQTNV FEHPGARDVI RREEFERVGA TSAREVLNRI PGVNAPDNNG
TGSHDMALNF GIRGLNPRLA SRSTVLMDGI PVPFAPYGQP QLSFAPISMG NMDAVDVVRG
GGAVRYGPQN VGGIVNFVTR AIPDTPTLKG GIQTETSPSS SHDGFKTTGN LLAGGTADNG
LGGAILYSGV RGGDWREHSD TEIDDLILKG KYQIDDANSL NAMAQYYDGE AQMPGGLSVA
DYDADPYQST RLKDKFWGRR TLFNFGYRYE QDARVFTANT FFTKTLRSGY LDQGSFVSLS
PREYWVRGLE TRFSQGFALG ETWHEVGVGY RYVNEAGHEL RYREPVTGEL PTTASRNDRD
TRGATEAHAF YIDDRIDIGK WTITPGIRYE MIDTAQNNNL TNARYQGDYS TALPALNVLY
HLTDTWNLYA NTEGSFGSVQ YSQMPNRVTG DEVKPEKART WELGTRYDNG NLRAEIGAFL
INFDNQYDSN QTNDTVIARG ETRHQGIETS VNYALEGLSP VLAGYDVYAT YAFVDATIRE
DGPNKGNRVP FSSKHKGTMG VSYTEGPWKL NFDSAFQSDQ FADNANTSTE SADGSTGKIP
GYMLFSTRAN YDFGPQLSDL NVAVGMKNIF NRQYYTRSFD DNNRGKYVGE PRTVYVQTSV
AF
|
|---|
| |