| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0990 |
|---|
| Symbol | |
|---|
| ID | 3366484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1120149 |
|---|
| End bp | 1121831 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637651333 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_234084 |
|---|
| Protein GI | 66044243 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.784735 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACAGA CTCGCGTTCT TCCGCCCGCC GATGGCGCGT ATCAGTGCCC TCTGTTGATC
AAGCGCCTGC TGTTGTCGGG CGGTCGTTAT GAAAAGACGC GCGAAATCAT CTACCGTGAT
TCGGTCCGCT ACACCTACGC GACCCTCAAC GAACGCATAT GCCGCCTCGC CAACGTACTG
ACAGCGGCGG GCGTGAAGGC TGGCGATACC GTGGCGGTTA TGGACTGGGA CAGCCACCGC
TACCTGGAAT GCATGTTCGC CATCCCGATG ATTGGCGCGG TCATCCACAC CGTCAATGTG
CGACTTTCTC CCGAGCAGAT CGCCTACACC ATCAACCACG CCGACGACCG TCTGGTGCTG
GTGAATAGCG AGTTCACGGG ACTCTATCAG GCGATGTCCG GACACCTGAG CACGGTCGAG
AAGACCCTGT TGCTGACGGA TTTGCCAGAC AAGACTGCCG AGCTGCCCAA CCTAGTGGGC
GAGTACGAGA CCCTGCTGGC GGCGGCCAGC CCCGAATACG TGTTCGAGGA TTTCGACGAA
AACTCGGTCG CCACCACGTT CTACACCACC GGCACCACTG GCAACCCCAA AGGGGTGTAT
TTCACCCACC GCCAACTGGT GCTGCACACC ATGGGCGTGG CGACCATCAT GGGCTGTATC
GACAGCACCC GGCTGCTGGG CACCGATGAC GTCTACATGC CCATCACGCC GATGTTTCAC
GTGCACGCCT GGGGCATTCC CTATGCGGCA ACCATGCTCG GTCTGAAACA GGTGTATCCG
GGCCGCTACG ATCCCGAGTT GCTGGTGGAG CTCTGGCGCA GGGAGAACGT CACCTTTTCC
CATTGCGTGC CGACCATCTT GCAAATGCTG CTCAACGCCA AGTCTGCCCA GAACGTCGAT
TTCGGTGGCT GGAAGATCAT CATTGGCGGC AGCTCCCTGA CCCGCAGTCT GTATCAGGCC
GCCAAATCCC GCGGCATCCA GCTCACTGCC GCCTACGGCA TGTCTGAAAC CGGACCACTC
ATATCCGTAG CGCACATCAA CGAAGAGTTG AAAGCCGGCA GTGAAGACGA GCGCATCACC
TACCGGATCA AGGCCGGCGT GCCGGGAATG CTGGTGGAAG CCGCCATCAT CGATCAGCAG
GGCAACTTCC TCCCGGCCGA CGGCGAAACC CAGGGAGAGC TGGTGCTGCG TGCGCCCTGG
CTGACCGGAA GCTACTTTCG CGAGCCCGAA AAAGGCGCCG AGCTGTGGGC GGGCGGCTGG
CTGCACACCG GTGATGTGGC GACGCTGGAC GGCATGGGCT TCATCGACAT TCGCGACCGC
ATCAAGGACG TGATCAAGAC CGGTGGCGAA TGGGTTTCGT CGCTGGAACT CGAAGATTTG
TGCAGCCGCC ACCCGGCAGT GCGCGAAGTG GCAGTGGTCG GCATCGCCGA TCCGCAATGG
GGAGAACGGC CGTTTGCCTT GCTGGTGATT CGCGATGGGC ACCAGCTCGA CGCTAAGGGT
TTGAAGGAGC ACCTCAAGCC GTTTGTTGAG CAAGGTCACA TCAATAAGTG GGCGATTCCC
AGCCAGATCG CGCTTGTTAC CGAAATTCCC AAGACCAGCG TCGGCAAGCT GGACAAGAAA
CGCATGCGCC TGGACATCGT GGAGTGGCAA AGCAGCAACA GTGCCTTTCT CTCGACCCTC
TGA
|
|---|
| Protein sequence | MLQTRVLPPA DGAYQCPLLI KRLLLSGGRY EKTREIIYRD SVRYTYATLN ERICRLANVL
TAAGVKAGDT VAVMDWDSHR YLECMFAIPM IGAVIHTVNV RLSPEQIAYT INHADDRLVL
VNSEFTGLYQ AMSGHLSTVE KTLLLTDLPD KTAELPNLVG EYETLLAAAS PEYVFEDFDE
NSVATTFYTT GTTGNPKGVY FTHRQLVLHT MGVATIMGCI DSTRLLGTDD VYMPITPMFH
VHAWGIPYAA TMLGLKQVYP GRYDPELLVE LWRRENVTFS HCVPTILQML LNAKSAQNVD
FGGWKIIIGG SSLTRSLYQA AKSRGIQLTA AYGMSETGPL ISVAHINEEL KAGSEDERIT
YRIKAGVPGM LVEAAIIDQQ GNFLPADGET QGELVLRAPW LTGSYFREPE KGAELWAGGW
LHTGDVATLD GMGFIDIRDR IKDVIKTGGE WVSSLELEDL CSRHPAVREV AVVGIADPQW
GERPFALLVI RDGHQLDAKG LKEHLKPFVE QGHINKWAIP SQIALVTEIP KTSVGKLDKK
RMRLDIVEWQ SSNSAFLSTL
|
|---|
| |