| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0974 |
|---|
| Symbol | |
|---|
| ID | 3366468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1106447 |
|---|
| End bp | 1107268 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637651317 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_234068 |
|---|
| Protein GI | 66044227 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0265185 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATTATC GCGCTCTGCT GGGCATCGGC CTGGTCACTC TGGCAGCCTC CACGCAAGTT
CTGGCCGGCG CCACGCTGGA TCGCGTGCAG AAAAACAAAG AGCTGGTCAA CGTCCTCATG
GAAAGTTACC CGCCCTTCTC TTTCCTGAAT GACAAGAATG AACTGGACGG CTTCGATGTC
GACGTCGCCA AGGCCGTGGC GCAGAAACTG GGCGTCAAGC TGCGCCTCGA AACACCGTCT
TGGGACGTGA TCGCCGCGGG CCACTGGAGC GGACGTTATG ACATCTGCGT CTGCTCGATG
ACACCGAGCA AGGCCCGCGC CGAAGTGTTC AACTTCCCGG TCGAGTACTA CGCCTCGCCT
GCAGTGATCG TGGTCAACGC CTCGGATGAT CGTATCCATT CGGCCGAGGA CCTGAGCGGC
AAGAAAGTCG GCCTGACCAG CGCCTCCAGC TACGAAAGTT ACCTGAACAA GAACCTGGTC
ATCGATGGCG CCGAAGACAA GCCCCTGCAG TACCCGTTCG AAGACGTACA GATCGCCCCG
TACGACAACG ACAACGTGGC CTTTCAAGAC CTTGGGCTGG GTGCTGGCAA GCGGCTGGAC
GCGATACTGA CCAATCTGGT GACCGCAAAA CCGCGTCTGG ATCAGGACAA GCGCTTCAAA
CTGGCGGGCG AGCCGCTGTA TGAAGAACCC AACTCCGTGG CCATCGAAAA AGACGATCCG
GAATGGGACG CCAAGGTTCG CGAAGTCTTC GCCGAACTCA AGAGCGACGG CACCCTGAGC
AAGCTGTCGC AAAAGTGGAT CGGTGCTGAC ATCAGCAAAT GA
|
|---|
| Protein sequence | MNYRALLGIG LVTLAASTQV LAGATLDRVQ KNKELVNVLM ESYPPFSFLN DKNELDGFDV
DVAKAVAQKL GVKLRLETPS WDVIAAGHWS GRYDICVCSM TPSKARAEVF NFPVEYYASP
AVIVVNASDD RIHSAEDLSG KKVGLTSASS YESYLNKNLV IDGAEDKPLQ YPFEDVQIAP
YDNDNVAFQD LGLGAGKRLD AILTNLVTAK PRLDQDKRFK LAGEPLYEEP NSVAIEKDDP
EWDAKVREVF AELKSDGTLS KLSQKWIGAD ISK
|
|---|
| |