| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0935 |
|---|
| Symbol | |
|---|
| ID | 3366428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1069923 |
|---|
| End bp | 1071332 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637651279 |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_234031 |
|---|
| Protein GI | 66044190 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.219048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.252651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGC TGCGCTTCGT TCCTGTGTTT CTTTCCCTCG GGTTGGCCAG CATTCAGGTC
CATGCAGACC CCACGCAGCC CGCTGCACCC CAGGTGACCA GCGCTTCGGC ATACTCCGTG
GATCTGATGA AGCTGTATCG CGAGGCTCGT CTGGAAGACC CGCGCATGCT GTCTGCCTAC
CTGCGTGCAC AGTCGGCAGT CGACAGCGAG CGCGATGCGT TCGGCGGGCT GTTGCCGCAA
GTAACTGCGA ACGGCAGTTA CAACCGGATC CTGCGCAAGG ACGACACGCA ACGCGAGATC
TATAACAACT CCAGCTATTC GCTCAACCTG ACTCAGTACC TGTACAACAA GCAGGCTTGG
GAAGCCTACC AGAAGGCCAA GAGCACGACG GAGCAGAAGG GGCATCAGGC CGAAGATGCC
CAGGCTGAGG CCACGGTTGA TCTGGCCAAA CGGTACTTCC AGGCGCTGTC TGCCGACGAT
GAACTCGAGC TGATCATGGC CGAGCGCCGG GCGACGCAAA AGAGCCTGGA TCGGGTCAGT
GCGATGTACG ACAAAAAGAT GGCCGTGGTC ACTGATCTGC TGGATCTGAA AGCGCGTGTC
GATTTGCTGG CCGCGCAGGA GGTTGATGCC CGTAACCAGA TCAGGCTCAG CCGTGCTGCA
CTCTCTGAAA TTGTCGGTCG GCCGATCACC GAGCCTTTGA GCCGCATCAG AAACGACATT
GCGCTGCAGG CGCCGTCCAA ATCAATGGAC ACCTGGGTGG CCCAGGCCAT CGATAGCAAC
CCGTTGCTCA AGGCGCGTGA AAGCAGCCTC GACGTTGCCA ACGCAGCGGT ACGTGAAGGC
AAGGGCGGGC ATTATCCGAC CCTGACCTTC ACCCTGGGTG CCCAGCAAAG TGACGTGGGC
TACGACAACA CCCTGTCACC GCGCAGCGAC AGCTATGTGG CGACAATCGG GGTGCGCGTG
CCGATTTACA GCGGTGGCTC GACCTCTGCG CGAGTGCGTG GGCTGTACAA CGAGCAACTG
GCTACCGAAC AGGACGTGGA AAGCGTGCGC CGTCAGGTGG TCAAGGAAAC CACCAACGCC
TACCTGACGG CGTTTTCCAG TGTCGAGAAG ATCCGCGCCA ACAAGAACGC GCTGGCATCG
GCAGAGCAAT CGAGTATTGC GGCGCAGAAA GCCTTCTCCT ATGGCGTTGT GAACGCGGTC
GATGTGCTGA CCAGCGTGCA GAACGAGTTC AAGGCGCGAC GTGACCTGCT CAGGGCGCAG
TACGACTTCA TCACCAACCT GTTCATCCTC AATCGATGGG CAGGCCGTCC GCCACAGGAA
AGTGTCGACA GCGTCAATGT CTGGCTGGGT GGTACCAATC CGGCAGTCGA GAAGGCTGCG
GACTCGGCCT TGAAAAAGAC GCCCCGATAG
|
|---|
| Protein sequence | MTVLRFVPVF LSLGLASIQV HADPTQPAAP QVTSASAYSV DLMKLYREAR LEDPRMLSAY
LRAQSAVDSE RDAFGGLLPQ VTANGSYNRI LRKDDTQREI YNNSSYSLNL TQYLYNKQAW
EAYQKAKSTT EQKGHQAEDA QAEATVDLAK RYFQALSADD ELELIMAERR ATQKSLDRVS
AMYDKKMAVV TDLLDLKARV DLLAAQEVDA RNQIRLSRAA LSEIVGRPIT EPLSRIRNDI
ALQAPSKSMD TWVAQAIDSN PLLKARESSL DVANAAVREG KGGHYPTLTF TLGAQQSDVG
YDNTLSPRSD SYVATIGVRV PIYSGGSTSA RVRGLYNEQL ATEQDVESVR RQVVKETTNA
YLTAFSSVEK IRANKNALAS AEQSSIAAQK AFSYGVVNAV DVLTSVQNEF KARRDLLRAQ
YDFITNLFIL NRWAGRPPQE SVDSVNVWLG GTNPAVEKAA DSALKKTPR
|
|---|
| |