| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0934 |
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| Symbol | |
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| ID | 3366427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 1068604 |
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| End bp | 1069926 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637651278 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_234030 |
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| Protein GI | 66044189 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0970473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.242735 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATTA AGACAATATC CACGCTCGAC ACGCACGCGG ATGACATGCC CACCTCTGAT
CGCGGGATTC GCCGGATCGG TGTGACGATC GTACTGGTCA CCTTCGGCCT GTTCGGTACC
TGGGCAGCGC TGGCCCCATT GGATAATGCG GTGTACGGCT CGGGTCTGGT AATGGTGCAG
AGTTATCGCA AGACGGTTCA ACATCTTGAA GGCGGGATCG TCAAGGAACT GCTTGTCCGT
GACGGGGACA CCGTGCATAA GGGTGATCCG CTGATCGTAT TGGACGACTC GCAGTTGCGC
TCCCAATACG AGTCGACCCG TAATCAGCTG ATTTCGACCC AGGCCAGGGA GGCACGACTG
CGCGCCGAGC GCGACGAGCT GCCGTCGATT CCGCCACTGA CCATCACTGG TACGGACAGT
GTGCGGGCTA AAGAGGCCAT AGCAGGTGAG CAACAGGTAT TCAGCACCCG TAAAAACTCG
CGCCTGACCG AGATATCGGT GCAACGTGAA CGCATCGGGC AATTGAAGCA GCAGATCAGT
GGTCTGCGAG ACATGATCCG CACCAAGGTC AGCCTCGAAA AATCCTACAG CAGCGAAATC
ACTGAACTGA AGGATCTGCT GTCTCAGGGC TTTGTCGACA AGCAACGCTT GCTGGAGCAG
GAGCGCAAGC TGGACATGCT CAAGTCCGAA GTGGCCGATC ACGAGTCCAC GATCACCAAG
ACTCAGCTAC AGATCAGCGA GACTGAACTG CAGATCATTC AGTTGAACAA AAACTTCAGC
TCTGACGTCG CGAAAGAACT AAGCGATGTA CAGGCCAAGG TATTCGATTT GCAGGAGACC
GCTAACGCGC TGCAGGACCG TCTGTCTCGC GTGGTCATTC GGGCTCCTGA GGACGGCATG
GTACTGGACA TGAAAGTTCA TACCGTTGGC GGCGTAGTCA GCGCCGGTAC GCCTTTGCTG
GATATCGTGC CGGAATCTTC CGAGCTGGTC GTTGAGGCTC ATGTGGCTAT CACGGACATT
GACCGGATTT CCATCGGCAA GCTGACAGAC GTTCACTTCA GCGCCTTCAA CAGTGCTACC
ACCCCTGTCA TCGAGGGTGA GGTGACGCGT ATCTCCGCTG ACCGTTTGAA AGACGATGCC
GGTGAGCCGT ATTACCTGGT TCGGGTAAAA CTGACCGAGA AAGGCATGAA GCGTCTTGGC
GACCGCAAGT TGCAGCCGGG CATGCCCGCT GAAGTGCTGA TCAATGCTGG TGAACGGACC
ATGCTTCAAT ACCTGTTGAA GCCGGCGTCC AATGTATTTA TCAAATCGAT GATCGAGGAA
TGA
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| Protein sequence | MSIKTISTLD THADDMPTSD RGIRRIGVTI VLVTFGLFGT WAALAPLDNA VYGSGLVMVQ
SYRKTVQHLE GGIVKELLVR DGDTVHKGDP LIVLDDSQLR SQYESTRNQL ISTQAREARL
RAERDELPSI PPLTITGTDS VRAKEAIAGE QQVFSTRKNS RLTEISVQRE RIGQLKQQIS
GLRDMIRTKV SLEKSYSSEI TELKDLLSQG FVDKQRLLEQ ERKLDMLKSE VADHESTITK
TQLQISETEL QIIQLNKNFS SDVAKELSDV QAKVFDLQET ANALQDRLSR VVIRAPEDGM
VLDMKVHTVG GVVSAGTPLL DIVPESSELV VEAHVAITDI DRISIGKLTD VHFSAFNSAT
TPVIEGEVTR ISADRLKDDA GEPYYLVRVK LTEKGMKRLG DRKLQPGMPA EVLINAGERT
MLQYLLKPAS NVFIKSMIEE
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