| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0933 |
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| Symbol | |
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| ID | 3366426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 1066836 |
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| End bp | 1068590 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637651277 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_234029 |
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| Protein GI | 66044188 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0820439 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCGTT CACACGAAAA TAATTTGCAG GTAGCCCTCA AGGCTTGCAA AGGCAGCTTT
ATCTCAGTCG GTTTCTTCAG TCTGTTTGTA AACGCCTTGA TGCTGGTCCC CACCCTTTAC
ATGATCCAGG TTTCCGGGCG GGTGGTACCC AGTAGCAGCA CTCCAACACT GATCATGCTC
ACCCTGATAA TGACAGTTCT CATGATTACC ATGGGCTCCC TGGAGTGGGT CCGATCCAGA
ATCATGGTCC GTATCAGTAA CAAGCTCGAC GTTTTGCTCA GTCGCGATGT CTACCAGGCC
AGCTTCAGGA AAGCGTTGAG AAGTGGTGGC ATGGATGCAT CGGCCCAATC ACTCAATGAT
CTGACTTCAC TGCGGCAATT TCTCACGGGT AATGGCCTGT TCGCATTTTT TGACGCACCA
TGGCTGCCGA TTTACACAGC GGTCATGTTC ATATTCCACC CTTGGTTTGG CTGGATGACC
GTAGGTTCCG CCATTGTGCT GGTGGTGCTG GCTTATTTGA ACCACCGTTT CACCGGTAAG
GCGCTGACCG AGGCTAACCA GCAAAGCCTG ACTGCAAATC TTCTGACTAC CAAAAACCTG
CGCAATGCAG AAGTCATCGA GTCAATGGGC ATGCTTGACA CCTTGATGGC CCGTTGGGGC
AAGCGGCAGC GCAGGGTGCT GGTTCTGCAG TCTGATGCCA GCGACAAAAG CGGGACGATC
AGCTCTATTT CAAGAACCTT CAGGAACTGG GCTCAGTCAA TCATGCTGGC GCTGGGGGCT
TATCTGGTCA TTACTCATCA GATCAATCCG GGCTTGATGA TGGCCGGTTC GCTTTTGTTA
GGACGCGCTC TTTCGCCCGT TGACCAGATT ATCAATACCT GGAAAGGCTT TGTGGCTGCG
CGCGTTCAGT ACACTCGCCT GAGTGAAACG CTTGAAAAGC TGCATAACGA ACCGGATCGC
ATGGCTTTGC CTGATCCCGA AGGACATATT CAGGTCGAAA ACCTGGTAGT CACACCGCCG
GGTGGCAAGA ACCCGGTTAT TCGCAACATC AGTTTCGTAA CGCCGGCTGG CACCATTGTG
GGTATTGTCG GGCCGAGCGC AGCAGGCAAA TCGACCCTGG TGAGAGCCCT GTTGGGCATC
TGGCCGGCAC AACACGGTAC GGTGCGTCTG GACGGTGCCG ACATCAGTGC CTGGGATAAA
CAGAAGCTTG GTCCGCACTT GGGCTATCTG CCACAGGACA TCGAACTGTT CGAGGGCAGC
ATCAGCGATA ACATCGCTCG ATTTGCCAAG GTTGACCCCG AGAAAGTCGT TCTGGCGGCG
CGCACCGCAG GTGTGCATGA AATGATCCTG CAACTGCCCG ACGGCTACGA CACCGTGATC
GGCAGTGATG GCGTCAACCT GTCTGGCGGA CAGCGGCAAC GCATCGGTCT GGCCAGAGCT
ATCTATGGCA GCCCGCGGTT GATTGTGCTG GATGAGCCCA ACTCCAATCT CGATGAAGTC
GGCGAGCGCG CTCTTAGCGT CGCCCTGCAA CTGATTAAGG AGTCAGGGGC CACGGTGTTT
ATCGTTTCTC ACCGTCCCAA TATTCTGTCG CGGCTTGACC GGGTAATGGT CATGAGCGCC
GGCACCATCA CCCTGTACGG CGCGCGTGAT CAGGTCATTG CCGAGCTGGC ACAGCAACAG
GCCAAAGCGC AGCAGGCTCA GCAACGGGTG GCTCCTGCAG TCACCGGTGT CGGCCCTGCG
CAACCTGGCG CGTGA
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| Protein sequence | MSRSHENNLQ VALKACKGSF ISVGFFSLFV NALMLVPTLY MIQVSGRVVP SSSTPTLIML
TLIMTVLMIT MGSLEWVRSR IMVRISNKLD VLLSRDVYQA SFRKALRSGG MDASAQSLND
LTSLRQFLTG NGLFAFFDAP WLPIYTAVMF IFHPWFGWMT VGSAIVLVVL AYLNHRFTGK
ALTEANQQSL TANLLTTKNL RNAEVIESMG MLDTLMARWG KRQRRVLVLQ SDASDKSGTI
SSISRTFRNW AQSIMLALGA YLVITHQINP GLMMAGSLLL GRALSPVDQI INTWKGFVAA
RVQYTRLSET LEKLHNEPDR MALPDPEGHI QVENLVVTPP GGKNPVIRNI SFVTPAGTIV
GIVGPSAAGK STLVRALLGI WPAQHGTVRL DGADISAWDK QKLGPHLGYL PQDIELFEGS
ISDNIARFAK VDPEKVVLAA RTAGVHEMIL QLPDGYDTVI GSDGVNLSGG QRQRIGLARA
IYGSPRLIVL DEPNSNLDEV GERALSVALQ LIKESGATVF IVSHRPNILS RLDRVMVMSA
GTITLYGARD QVIAELAQQQ AKAQQAQQRV APAVTGVGPA QPGA
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