| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0898 |
|---|
| Symbol | |
|---|
| ID | 3366390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1017185 |
|---|
| End bp | 1018465 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637651241 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_233994 |
|---|
| Protein GI | 66044153 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.23627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCTT TTATACTGTT GGGCAGCTTT ATCGCGTTGA TCCTGATCGG CATGCCGGTG
GCCTACGCGC TGGGCCTTTC AGCCCTGATC GGCGCCTGGT GGATCGACAT CCCGGCCGAT
GCGCTGATGA TCCAGATTGC GGGCGGGGTT AACAAATTCT CGCTGTTGGC GATTCCGTTC
TTCGTGCTGG CCGGCGCGAT CATGGCCGAA GGCGGCATGT CGCGACGTCT GGTCGCGTTT
GCTGCGGTGC TGGTGGGCTT CGTGCGTGGC GGGCTGTCGC TGGTCAATAT CGTGGCTTCG
ACTTTCTTCG GCGCGATCTC GGGTTCCTCG GTGGCCGACA CGGCCTCGGT AGGCTCGGTG
CTGATCCCGG AAATGGAACG CAACGGCTAC CCGCGGGACT TCTCGACGGC AGTGACCGTC
AGCGGCTCGG TGCAGGCGCT GCTGACTCCG CCCAGCCACA ACTCGGTGCT CTATTCGCTG
GCGGCAGGCG GCACGGTGTC GATCGCGTCG CTGTTCATGG CCGGGATCCT CCCGGGCCTG
CTGCTCAGCG CGGTGATGAT GGGCCTGTGC ATGATCTTCG CGCGCAAGCG CAATTACCCC
AAGGGTGAAG TGGTGCCGCT GCGTCAGGCG CTGAAAATCG CCGGTGAAGC GCTCTGGGGG
ATGATGGCCA TGGTCATTAT TCTCGGCGGC ATTCTGTCGG GGATTTTCAC GGCCACCGAG
TCGGCGGCGA TTGCCGTGCT CTGGGCGTTC TTTGTCACCA TGTTCATCTA CCGCGACTAC
AAATGGCGCG ATCTGCCCAA ACTGATGCAC CGGGCGGCAC GCACCATTTC CATCGTGATG
ATTCTGATCG GTTTTGCCGC CAGCTTCGGT TACATCCTGA CACTGATGGA AATACCGATG
AAGATCACCA CCGCGTTCCT GACCCTGTCG GACAACCGCT ACGTGATCCT GATGTGCATC
AACGTGATGT TGCTGCTGCT CGGTACGGTC ATGGACATGG CGCCGCTGAT TCTGATCCTG
ACCCCGATTC TGTTGCCGGT CATCGTCGGT GTCGGTATCG ATCCGGTGCA CTTCGGCATG
ATCATGCTGG TCAATCTGGG GATCGGGCTG ATTACCCCGC CGGTGGGCGC GGTGCTGTTC
GTCGGTGCTG CCGTGGGCAA GGTCACCATC GAAGCCACGG TAAAAGCACT GGTGCCGTTC
TATGTCGCGC TGTTCCTGGT GCTGATGCTG GTGACCTACA TTCCTGCCAT CTCGTTGTGG
CTGCCGAGCG TCGTGCTCTG A
|
|---|
| Protein sequence | MDAFILLGSF IALILIGMPV AYALGLSALI GAWWIDIPAD ALMIQIAGGV NKFSLLAIPF
FVLAGAIMAE GGMSRRLVAF AAVLVGFVRG GLSLVNIVAS TFFGAISGSS VADTASVGSV
LIPEMERNGY PRDFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIAS LFMAGILPGL
LLSAVMMGLC MIFARKRNYP KGEVVPLRQA LKIAGEALWG MMAMVIILGG ILSGIFTATE
SAAIAVLWAF FVTMFIYRDY KWRDLPKLMH RAARTISIVM ILIGFAASFG YILTLMEIPM
KITTAFLTLS DNRYVILMCI NVMLLLLGTV MDMAPLILIL TPILLPVIVG VGIDPVHFGM
IMLVNLGIGL ITPPVGAVLF VGAAVGKVTI EATVKALVPF YVALFLVLML VTYIPAISLW
LPSVVL
|
|---|
| |