| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0892 |
|---|
| Symbol | |
|---|
| ID | 3366384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1012825 |
|---|
| End bp | 1013433 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637651235 |
|---|
| Product | RNA polymerase sigma factor RpoE |
|---|
| Protein accession | YP_233988 |
|---|
| Protein GI | 66044147 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.645339 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATAA CTGCCAGTCT CAGGACCTTC TGTCACTTGT CCCCCTCTCA CAGCGAATCG
ACAATCACCC GACTTTGGAT CGATGAAGTC ACCGCCGTGG CCCGCCAGAG GGACCGCGAC
AGCTTCATGC GCATTTACGA TCACTTCGCT CCGCGCCTGT TGCGCTACCT CACCGGGCTG
AATGTGCCAG AAGGTCAGGC CGAAGAGTTG GTGCAGGAAG TGCTGCTCAA ACTGTGGCAC
AAGGCCGACT CGTTCGACCC GGCCAAGGCC AGCCTGGGGA CATGGTTGTT TCGCATCGCA
CGCAATCTTT ACATCGACAG CGTGCGCAAG GACCGTGGCT GGGTGCAGGT GCAGAACTCG
CTGGAACAAC TCGAGCGTCT GGAGGCTCCG GTAGATCGAA CACTCGATTA CAGCCAGCGC
CAGGAGCAAC AACTCAACAT CGCCATCCAG AACCTGCCCG CCGATCAGGC CCGAGTGTTG
CGAATGTCGT ATTTCGAAGC GCTCAGCCAC CGGGAGATTT CCGAACGCTT GGGTATGCCG
CTTGGCACAG TGAAGTCCTG CCTGCGCCTT GCGTTTCAAA AATTGCGCTC GCGGATAGAG
GAATCATGA
|
|---|
| Protein sequence | MRITASLRTF CHLSPSHSES TITRLWIDEV TAVARQRDRD SFMRIYDHFA PRLLRYLTGL
NVPEGQAEEL VQEVLLKLWH KADSFDPAKA SLGTWLFRIA RNLYIDSVRK DRGWVQVQNS
LEQLERLEAP VDRTLDYSQR QEQQLNIAIQ NLPADQARVL RMSYFEALSH REISERLGMP
LGTVKSCLRL AFQKLRSRIE ES
|
|---|
| |