Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0763 |
Symbol | |
ID | 3366250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 869019 |
End bp | 870596 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637651102 |
Product | porin, LamB type |
Protein accession | YP_233859 |
Protein GI | 66044018 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4580] Maltoporin (phage lambda and maltose receptor) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00125923 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.916374 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAACG CATCAAGATG GCTACTCGCA GGGGTACTCG GCACCTCGAC AACCGTCTCT CAGGCCGCGA CGCTGGAAGA ACGGATGGCC GCTTTTGAAG CCCGTGCCAG CGCTGCGGAA AAACGTGCAG CCGCAGCCGA ACAGCAAACC CAGGCGCTCG CCAGGGAACT GCAGCAACTC AAACTCGCCA CCCCCGCTGC GCAGCCTGCC GCGCCCACTT CCGCGCCGAC TGTGGCAGCC AGTCCACAGC CCGCTCTGGA TGATCGCGTA GCAAAACTCG AAGCCCGCCA GCAAAGCATG GAGAAGCCAG GCGGTGTCGG ACACCTCACC GACGGGTTCA GCTTCAAGGG CTATGCTCGC TCCGGCCTGT TGATCAACGA CGGATTGGGC GGCGGTCGCG GCGGGCCTTA TACAACCCCC GCGGGTTCAG TCGGTGGGGC GGTCGGGCGC CTCGGTAACG AAGACGACAC CTACATGCGC TTCGATCTGT CGAAAGAGAT CTACGCGCAG AACGGCACGC GCTCCAAGTT CACCGTCTCC ATCGCCGATG GCGTTGAAAG CTATAACGAC TGGACACCCA CCGAAAGCAG CCTGAACGTG CGTCAGGTAT TTACCGAACT CGACCACATC GCCGCCTTCA AGGGTAATTC AGTGTTCGAG AACTCCACCC TGTGGGCCGG CAAGCGCTTC GACAGGGATA ATTTCGATAT CCACTGGCTG GACTCGGACG TGGTCTTTCT GGCCGGGACC GGTGGCGGTA TCTACGATGT GCAGATGACC AGGGACTGGC GCTCGAACTA CTCCCTGATC GGACGTAACT ACGGAGATTT CAGTGAGGGC GGCGTCGATG CCGATGTGGA AAGCTACATC CTGACCTCCA ACCAATTCTT CGACAATGGT CAGTGGCAGT GGATGTTCAA CGCTATTGGC GCAAGGAAAA ACGACGTCGG TACGCGCACC AATCAAGCCG GTTTTGCACC CGCAGATTCA GGCCTGCACA CCATGTTGGC CAATCACCAG AAAGACTTTT TCGGCCGCGA AGGCTTCTTC AAGACGGCGT TGCTCTATGG GCAGGGCCTG GGTGCACAGG TCAAGGACAT CGGCGCCGAT GGCGAACTGC TCGACGACGC CCGCGCGGTG CGTCTGGCCA TGTATGGCGA GACGCCTATC GCGCCGGGAT GGCGCATCGG CCCGAGCCTG CTGGCCGAGC AGAGCAAGGA CCGCTACGTC AAAGGCGACG ATTACCGCTG GCTCACGCTG AACATGCGCC TGGCCAACGA GATCAACAGC AACTTCGAGA TGGCCTACGA GCTGAGTTGG CAAACCATGG ACCTCGACCC CAAAGGCTAC CTGCAACGCA ATGCCGTCGA TGGTAACTTC TGGAAGTTTA CGGTGGCGCC GACCTTCAAG CCGGACATGG GTGACCTGCT CACGCGTCCC GAACTGCGAG TGTTCGCAAG CCTCATGAAC TGGTCTTCGG ACCTGGACCG CTACAGCACG ACCGGCAACT TCGGCAAAAG CGACTTCAAT TCCGGTGGTG TTTGGCAGTT AGGTATCCAG ATGGAGACCT GGTTCTAG
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Protein sequence | MQNASRWLLA GVLGTSTTVS QAATLEERMA AFEARASAAE KRAAAAEQQT QALARELQQL KLATPAAQPA APTSAPTVAA SPQPALDDRV AKLEARQQSM EKPGGVGHLT DGFSFKGYAR SGLLINDGLG GGRGGPYTTP AGSVGGAVGR LGNEDDTYMR FDLSKEIYAQ NGTRSKFTVS IADGVESYND WTPTESSLNV RQVFTELDHI AAFKGNSVFE NSTLWAGKRF DRDNFDIHWL DSDVVFLAGT GGGIYDVQMT RDWRSNYSLI GRNYGDFSEG GVDADVESYI LTSNQFFDNG QWQWMFNAIG ARKNDVGTRT NQAGFAPADS GLHTMLANHQ KDFFGREGFF KTALLYGQGL GAQVKDIGAD GELLDDARAV RLAMYGETPI APGWRIGPSL LAEQSKDRYV KGDDYRWLTL NMRLANEINS NFEMAYELSW QTMDLDPKGY LQRNAVDGNF WKFTVAPTFK PDMGDLLTRP ELRVFASLMN WSSDLDRYST TGNFGKSDFN SGGVWQLGIQ METWF
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