| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0714 |
|---|
| Symbol | |
|---|
| ID | 3366197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 818332 |
|---|
| End bp | 818832 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637651059 |
|---|
| Product | type IV pilus biogenesis protein |
|---|
| Protein accession | YP_233820 |
|---|
| Protein GI | 66043979 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain
[TIGR02596] Verrucomicrobium spinosum paralogous family TIGR02596 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATG CAGGATTCAC ACTGATCGAA TTATTGATCG TCGTTGCACT GGTGGCCATC
CTCGCCAACG TCGCAACCCC GTCTTTCAAG GAACTCATCG ATTCCAGCCG CGGGCTTGCA
ACCGCCCGGG AGCTGGCCAG CGGCATTCGC TCGGCGAGAG CGGCCGCAGT CACACGCAAT
CAGATCGTTA CGCTTCATGC CATCGAGAAC GACTGGAGCA ACGGCTGGCG GATCATACTC
GACGCGGATG GCAAAGGTCC CGACGAAAAC GATCCGGTGC TGATAGAACG CGCCAATAGC
AGCACGGCGC GAGTGGTCGA TAACCGCAAG CGTGTAGAGG AAATCAGTTT CAATGGTTTG
GGGACGTTGC GGCGCAGGAC CGCCAGGACG TTGCACGTAT GTGCCGCAGA CCAGCCGGTG
AGCAACTATC GAGTGATAGT CGCACCGGCC GGGCGCGTGA GGGTCGAGGA CACGAAAATC
GATGCAGCGC TGTGTGGCTG A
|
|---|
| Protein sequence | MKHAGFTLIE LLIVVALVAI LANVATPSFK ELIDSSRGLA TARELASGIR SARAAAVTRN
QIVTLHAIEN DWSNGWRIIL DADGKGPDEN DPVLIERANS STARVVDNRK RVEEISFNGL
GTLRRRTART LHVCAADQPV SNYRVIVAPA GRVRVEDTKI DAALCG
|
|---|
| |