Gene Psyr_0681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0681 
Symbol 
ID3366164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp781010 
End bp784702 
Gene Length3693 bp 
Protein Length1230 aa 
Translation table11 
GC content64% 
IMG OID637651028 
Productexodeoxyribonuclease V, beta subunit 
Protein accessionYP_233789 
Protein GI66043948 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID[TIGR00609] exodeoxyribonuclease V, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.639627 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAGC AATCCCTTCC TCTGGCGCTG CGCTTCCCAC TGCGCGGCAG CCAGTTGATC 
GAGGCCAGCG CCGGGACCGG CAAGACCTTC ACCATCTCCG CCTTGTACTT GCGTCTGGTG
CTCGGCCACG GTACCGAGCA GTGCGGCTTT GGTCGTGAAC TGCTGCCGCC GCAGATCCTT
GTGGTGACCT TTACCGACGC CGCGACCAAG GAACTGCGTG ACAGAATTCG TACCCGGCTG
GCGGAGGCTG CACGCTTCTT TCGTGACGAG ATCCCTTCCC CCGATGGCCT GATTGCCGAG
CTGCGTGAAC AGTTTGAAGC GTCGCTATGG CCTGCCTGTG CCAGCCGTCT GGACATCGCC
GCGCAGTGGA TGGACGAGGC CGCGGTCTCG ACCATCCACA GTTGGTGCCA GCGCATGTTG
CGCGAGCACG CATTCGACAG CGGCAGCCTG TTCACCCAGA CGCTGGAAAC CGACCACAGC
GATTTGCTCG GCGAAGTCCT GCGCGATTAC TGGCGGCGCT TCTGCTACCC CATGAGCGGT
GACGCGTTGA CCTGGGTGCG GGAAAACCTC AGCGGCCCCG CGGCGTTGCT GCCGCGTGTG
CGAGGTCTGT TCGGGCGTGA TCGCACCCCC CTCACGCAGG AACCGGCCGA ACTGATCGCG
GCGTCATTGC AAGAGCGCCG GGCAGCGCTT GCCGCGCTGA AAGCGCCGTG GGCCGTTTGG
TCTGACGAGT TGTATGCGCT GTGTCAGGAC GCGGTCGCTC GCAAGGCAGT CGATGGCCGC
AAAATGCAGG AGCGCTATTT CAAACCCTGG TTCGAAAAGC TTGCCGCCTG GGCCGCTGAC
GACACACAGG AAGCGCTGGA TCTGGGCACC GGTTTCACTC GTCTGACCCC CGACGGCATT
GCCGAAGCCT GGAAGGGCGA TCCACCTGCG CACCCGGCCT TCGAGGCCAT GGCACAGCTG
AAGGCGGCGC TCGATGGCTT GCCCAAACCG GACGCTGCCG TGTTGCAGCA TGCGGCGCAG
TGGGTCAGTG TCCGCTTTGA AGAAGAGAAG CGTCGCCGCG CCGAGATGGG CTTTGATGAC
ATGCTGCTCA GGCTCGACGC GGCCCTGCAT GGCGCTGGCG GCGAGCGTCT GGCCACCCTG
ATTCGCGAGC AGTTTCCGGT GGCGTTGATC GACGAATTCC AGGACACCGA CCCGGTCCAG
TACCGGATCT TCGACAGCAT CTATCGTCTC GAGGCCAACG ATGAGCAGAC CGGGCTGTTC
CTGATCGGCG ACCCGAAACA GGCGATCTAT GCCTTTCGCG GCGCCGATAT CTACACCTAC
CTGCGTGCCC GGCAGGCTAC CGATGGCCGT TGGCATACGC TGGACACCAA CTACCGCTCC
AGTCATGCGA TGGTCGAGTC GGTCAACCAC GTCTTCACGC GGGCAGAGCA ACGTGAGCAA
GGTCGCGGTG CGTTCCTGTT TCGTGATGAG CACGGCAATC AGGTGCCGTT CTCCGATGCG
CTGGCCCAAG GCCGCAAAGA GACGCTGCAC GTCGACGGTG CACCCCTGAC GGCGCTGACG
GTCTGGCACC TGCAAAGTGA CCAGCCGGTG TCCGGCGTGG TTTATCGTCA GCAGTTGGCA
GCCAGTTGCG CGAGCGAGAT CGTGCGTCTG CTCAATGCCG GTCAGCAGGG TAGTGCCGGT
TTCGTCACGC CCGACAGCAC ACTGCGCGGG CTGCGTCCGG CCGACATTGC GATTCTGGTC
CGCGACGGCA AGGAAGCGCA GGCGGTGCGT CAGCAACTGA CCGCGCGGGG TGTGCGCAGC
GTGTACCTGT CCGACAAGGA TTCCGTGTTT GCCGCTCAGG AAGCCCACGA CCTGCTGTCC
TGGCTCAAGG CCTGTGCCGA GCCGGACTCC GAGCGCACGC TGCGTGCCGC GCTGGCGTGT
ATCACGCTGG ACCTGCCGCT GGCCGAGCTG GAACGCCTGA ATCAGGACGA GCTGGCATGG
GAGCGGCGCG TCATGCAGTT TCGTGGCTAT CGCGCCATAT GGCGCAGCCA GGGCGTGTTG
CCGATGCTGC GTCGTCTGCT GCACGACTTT GCCCTGCCAC AGACCTTGAT GACCCGCAAC
GACGGTGAGC GAGTACTCAC CAACCTACTG CACCTGTCTG AACTGCTGCA GCAGGCCGCC
GCCGAACTGG ATGGCGAACA GGCGCTGATC CGTCATCTGG GCGACCACCT GGCACTTTCC
GGCCAGGCCG GCGAAGAGCA GATCCTGCGC CTGGAAAGCG ACGAGCAACT GGTCAAGGTG
GTCACCATCC ACAAGTCCAA GGGCCTGCAG TACCCGCTGG TGTTCCTGCC GTTCATTTGC
TCCTCGAAAC CGGTGGACGG CAGTCGCTTG CCGCTGCAGT TTCATGACGC CGACGGCAAG
TCGCAGATCA GCCTGCAGCC TACCGAGGCG CTGATTCAGC AAGCTGATGA CGAGCGTCTG
GCCGAAGACC TGCGTTTGCT CTACGTCGCA CTGACCCGAT CGGAACATGC CTGCTGGCTG
GGCGTCGCCG ACCTCAAGCG TGGCAATGCC AACACCTCGA TGCTGCACCG TTCCGCGCTG
GGTTACCTGC TGGGCGGTGG CGCAGCGCTG GCCGAGTCGG CGGAGTTGAA CATCTGGCTG
CGTGATCTGG CCCAGGGGTG TGACGCAATT GCCTTGCAGC CTGTTCCCGA GCCCACGGAC
GAGCGCTTCA GTGCGCCGCG CAACGCAGCG GCGCTGGTCA AGCTGCTGGT GCCCAAACGC
CGCGCTGCCG AGAACTGGTG GATTGCGTCC TACAGTGCCC TGCGTATCGG CGACACGGTA
ACGGCCGGTG CCGATGAATC GCCTGACAGC CCGCAGGCAC AGAAACTGTT CGACGACGAG
CGTCTGGACC CCGAAGCCCC GCGCGACATC CTGACCAGCG GCGGCGATAT CCATCGTTTT
CCGCGTGGCC CCAATCCCGG CACCTTTCTG CACGGGCTGC TCGAATGGGC TGGCAACGAA
GGTTTTGCAA ATACCGCGCA CGCGCCGGAC AAACTGCAGG ACGCCGTCGC CCGTCGTTGT
AATCGGCGCG GTTGGGCGGG CTGGATCAAT ACCCTGAGCG ATTGGCTGCA GCACCTGCTG
AACATGCCGC TGCGCCTGTC GCCTGATGCC GCACCGGTGG CCTTGGGCGA GCTGGATCAG
CCCAATCAGT ACCGTGTGGA AATGGAATTC TGGTTCGCCA GCAATAACGT CAACGTCGCG
CAAATGGACG CCCTCGTGCG CCGCTTCACC CACGACAACG CGCCGCGTGC TGCGACCGAG
ACGGTCTCGC TCAACGGCAT GTTCAAGGGC TTTATCGACC TGACGTTCGA ACACGAAGGC
CGGTATTACG TGGCGGACTA CAAGTCCAAC TGGCTGGGCA GCGACGACAG TGCGTACACC
CCGCTGGCCA TGGAAACCGC CATTCTCGAC AACCGCTACG ACCTGCAATA CGTCCTGTAC
CTGCTGGCTC TGCACCGCCA GCTCAAGACG CGGATGGCCG ACTACGATTA CGACCAGCAC
ATGGGCGGCG CGCTGTACCT GTTCCTGCGC GGTAGTCGCT CAGCCTCTCA GGGCGCGTAT
TTCGCCCGTC CGCCACGTGA GCTGATCGAG AGTCTTGACC TGCTGTTTCA GGGCAAACCG
ATAGCGCATG ACCTGCCGGG AGCATTGGCA TGA
 
Protein sequence
MSEQSLPLAL RFPLRGSQLI EASAGTGKTF TISALYLRLV LGHGTEQCGF GRELLPPQIL 
VVTFTDAATK ELRDRIRTRL AEAARFFRDE IPSPDGLIAE LREQFEASLW PACASRLDIA
AQWMDEAAVS TIHSWCQRML REHAFDSGSL FTQTLETDHS DLLGEVLRDY WRRFCYPMSG
DALTWVRENL SGPAALLPRV RGLFGRDRTP LTQEPAELIA ASLQERRAAL AALKAPWAVW
SDELYALCQD AVARKAVDGR KMQERYFKPW FEKLAAWAAD DTQEALDLGT GFTRLTPDGI
AEAWKGDPPA HPAFEAMAQL KAALDGLPKP DAAVLQHAAQ WVSVRFEEEK RRRAEMGFDD
MLLRLDAALH GAGGERLATL IREQFPVALI DEFQDTDPVQ YRIFDSIYRL EANDEQTGLF
LIGDPKQAIY AFRGADIYTY LRARQATDGR WHTLDTNYRS SHAMVESVNH VFTRAEQREQ
GRGAFLFRDE HGNQVPFSDA LAQGRKETLH VDGAPLTALT VWHLQSDQPV SGVVYRQQLA
ASCASEIVRL LNAGQQGSAG FVTPDSTLRG LRPADIAILV RDGKEAQAVR QQLTARGVRS
VYLSDKDSVF AAQEAHDLLS WLKACAEPDS ERTLRAALAC ITLDLPLAEL ERLNQDELAW
ERRVMQFRGY RAIWRSQGVL PMLRRLLHDF ALPQTLMTRN DGERVLTNLL HLSELLQQAA
AELDGEQALI RHLGDHLALS GQAGEEQILR LESDEQLVKV VTIHKSKGLQ YPLVFLPFIC
SSKPVDGSRL PLQFHDADGK SQISLQPTEA LIQQADDERL AEDLRLLYVA LTRSEHACWL
GVADLKRGNA NTSMLHRSAL GYLLGGGAAL AESAELNIWL RDLAQGCDAI ALQPVPEPTD
ERFSAPRNAA ALVKLLVPKR RAAENWWIAS YSALRIGDTV TAGADESPDS PQAQKLFDDE
RLDPEAPRDI LTSGGDIHRF PRGPNPGTFL HGLLEWAGNE GFANTAHAPD KLQDAVARRC
NRRGWAGWIN TLSDWLQHLL NMPLRLSPDA APVALGELDQ PNQYRVEMEF WFASNNVNVA
QMDALVRRFT HDNAPRAATE TVSLNGMFKG FIDLTFEHEG RYYVADYKSN WLGSDDSAYT
PLAMETAILD NRYDLQYVLY LLALHRQLKT RMADYDYDQH MGGALYLFLR GSRSASQGAY
FARPPRELIE SLDLLFQGKP IAHDLPGALA