| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0579 |
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| Symbol | |
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| ID | 3366057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 659938 |
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| End bp | 662571 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637650921 |
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| Product | 3'-5' exoribonuclease, VacB and RNase II |
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| Protein accession | YP_233687 |
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| Protein GI | 66043846 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATT GGCAGTCCCT CGATCCCGAG GCCGCTCGTG AAGCGGAAAA ATACGAAAAC
CCTATTCCCA GCCGCGAGCT GATCTTGCAG CACCTTGCCG AGCGCGGTTC GCCGGCCAGT
CGCGAGCAAC TGGTCGAAGA GTTCGGCCTG ACCACCGAAG ATCAATTCGA GGCTCTGCGC
CGCCGCCTTC GGGCGATGGA GCGTGACGCC CAGTTGATCT ACACCCGTCG CGGCACTTAC
GCACCGGTAG ACAAGCTTGA CCTGATCCTC GGTCGCATCT CCGGGCATCG TGATGGCTTC
GGCTTTCTGG TGCCGGACGA CGGCTCCGAC GACCTGTTCA TGAGCCCGGC GCAAATGCGC
CTGGTGTTCG ACGGTGACCG GGCGCTGGCG CGTGTTTCCG GCCTTGACCG TCGCGGCCGC
CGCGAAGGCG TGATCGTCGA AGTGATCTCG CGTGCTCACG AAAGCATAGT GGGTCGCTAT
TTCGAAGAAA GCGGCATTGG TTTTGTCGTA CCCGACAACC CGAAAATCCA GCAGGAAGTG
CTGGTAACGC CGGGTCGTAA CAACGGCGCC AAGATCGGCC AGTTCGTCGA GGTGAAAATC
ACCCATTGGC CGACACCGCG ATTCCAGCCG CAGGGCGATG TGATCGAAGT GGTGGGCAAC
TACATGGCGC CCGGCATGGA GATCGATGTC GCGCTACGTA CCTACGACAT TCCGCACGTG
TGGCCCGAGG CCGTACTCAA AGAGGCTGCC AAGCTCAAGC CGGAAGTCGA AGAGAAGGAC
AAGGAACACC GCGTCGATCT GCGCCATCTG CCGTTCGTGA CCATCGACGG CGAAGACGCT
CGCGACTTCG ACGATGCGGT CTATTGCGAA GCCAAACCGG GCAAACTGCG TTTGTTCTCC
GGCGGCTGGA AGCTCTACGT GGCGATTGCC GACGTATCGA GCTACGTGAA GATCGGCTCG
GCGCTGGATG CCGAATCCCA GGTGCGCGGC AACTCGGTGT ATTTCCCCGA GCGCGTCGTG
CCCATGCTGC CTGAGCAATT GTCCAACGGC CTGTGCTCGC TGAACCCGCA CGTCGATCGT
CTGGCCATGG TTTGCGAGAT GACCATCTCC AAGACCGGCG AGATGACTGA CTACGTGTTC
TACGAAGGCA TCATCCACTC CCACGCTCGC CTGACCTACA ACAAGGTCAG CACGATTCTG
GAACAGCCGA AAACCGCTGA AGCCAAGAGC CTGCGTGGCG AGTACGGCGA TGTGGTGCCG
CACCTCAAAC AGCTTTATGC CATGTACAAG GTATTGCTGG GCGCGCGTCA TGTGCGCGGT
GCGATCGATT TCGAGACGCA GGAAACCCGG ATCATCTTCG GTTCCGAGCG CAAGATTGCC
GAAATCCGTC CGACCACTCG TAATGATGCC CACAAGTTGA TCGAGGAATG CATGCTGGCC
GCCAACGTGG CCACCGCGCA GTTCCTGAAG AAGCATGAAA TTCCTGCGTT GTACCGCGTC
CACGACGGTC CGCCGCCAGA GCGCCTGGAA AAACTGCGCG CATTCCTGGG TGAGCTGGGT
CTGACGCTGC ACAAGGGCAA GGAAGGTCCG ACACCGAAGG ATTATCAGGC GCTGCTTGAA
ACCGTTCGCG ACCGTCCCGA CTACCACCTG ATCCAGACCG TGATGCTGCG TTCGTTGAGT
CAGGCGGTCT ACAGCTCGGA CAACAACGGT CACTTCGGTC TGAATTACGA AGCGTACACG
CACTTCACGT CGCCGATCCG TCGTTATCCG GACCTGCTGA CTCATCGCGC GATCCGCAGT
GTCATTCGCT CCAAGCAGGA TACGCCGCAC GTTCGTCGTG CCGGCGCGGC CACGATTCCG
AAGGCGCGCA TTTACCCGTA CGACGATGCG CTGCTCGACC AGTTGGGCGA ACAATGCTCG
ATGAGCGAGC GCCGTGCCGA CGAGGCTACG CGCGACGTAG TCAACTGGCT CAAGTGCGAA
TACATGAAGG ATCGCGTCGG CGAGTCGTTC CCGGGCGTGA TCACCGCTGT AACCGGCTTT
GGTCTGTTCG TCGAGCTCAC CGATATCTAT GTCGAAGGCC TGGTCCACGT GACCGCCTTG
CCGGGTGACT ACTACCACTT CGATCCGCTG CACCACCGCC TTGCCGGCGA GCGTACCGGG
CGTAACTTCC GCCTGGGCGA CACCGTTGAA GTGCGGGTCA TGCGCGTCGA TCTGGACGAG
CGCAAGATCG ATTTCGAGAT CTCCGAAGCG GCAGCGGCTG CGAAGCCGAC GGCGCGCAAG
CGTCGTGGTA ATGACACCGC GGCACCTGCT GCCACCACCA CGGCTGAAAA GGACAAGGCG
CCGGCCAAGT CCGGGCGTCG TAGCGCTTCG ACCAAGGAAA GCAGCCCCGA AGCGTATCGC
CCGAGCGATG CCGCGGCGAA AAACGCAGAA GTGCGTAAAA GCCGCGAGCT GAAAAAAGCG
CTTCTGGCAG ACGCGAAGGG TGGTAGCAAG GCATCGTCGG GAAAGTCTGA CAGGTCGGGC
TCTGCGCCTT CATCGGGCAA GCCGGCCAGC AAACACCGTA AAGGCTCGTC AAAAACGGGC
TCCGCGCCAG CTGCGAAAAG CAGTGGCGCT CGTAAACCCA AGGCCAAGTC ATGA
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| Protein sequence | MADWQSLDPE AAREAEKYEN PIPSRELILQ HLAERGSPAS REQLVEEFGL TTEDQFEALR
RRLRAMERDA QLIYTRRGTY APVDKLDLIL GRISGHRDGF GFLVPDDGSD DLFMSPAQMR
LVFDGDRALA RVSGLDRRGR REGVIVEVIS RAHESIVGRY FEESGIGFVV PDNPKIQQEV
LVTPGRNNGA KIGQFVEVKI THWPTPRFQP QGDVIEVVGN YMAPGMEIDV ALRTYDIPHV
WPEAVLKEAA KLKPEVEEKD KEHRVDLRHL PFVTIDGEDA RDFDDAVYCE AKPGKLRLFS
GGWKLYVAIA DVSSYVKIGS ALDAESQVRG NSVYFPERVV PMLPEQLSNG LCSLNPHVDR
LAMVCEMTIS KTGEMTDYVF YEGIIHSHAR LTYNKVSTIL EQPKTAEAKS LRGEYGDVVP
HLKQLYAMYK VLLGARHVRG AIDFETQETR IIFGSERKIA EIRPTTRNDA HKLIEECMLA
ANVATAQFLK KHEIPALYRV HDGPPPERLE KLRAFLGELG LTLHKGKEGP TPKDYQALLE
TVRDRPDYHL IQTVMLRSLS QAVYSSDNNG HFGLNYEAYT HFTSPIRRYP DLLTHRAIRS
VIRSKQDTPH VRRAGAATIP KARIYPYDDA LLDQLGEQCS MSERRADEAT RDVVNWLKCE
YMKDRVGESF PGVITAVTGF GLFVELTDIY VEGLVHVTAL PGDYYHFDPL HHRLAGERTG
RNFRLGDTVE VRVMRVDLDE RKIDFEISEA AAAAKPTARK RRGNDTAAPA ATTTAEKDKA
PAKSGRRSAS TKESSPEAYR PSDAAAKNAE VRKSRELKKA LLADAKGGSK ASSGKSDRSG
SAPSSGKPAS KHRKGSSKTG SAPAAKSSGA RKPKAKS
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