Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0572 |
Symbol | hfq |
ID | 3366048 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 650619 |
End bp | 650879 |
Gene Length | 261 bp |
Protein Length | 86 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637650912 |
Product | RNA-binding protein Hfq |
Protein accession | YP_233680 |
Protein GI | 66043839 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.753589 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAAAG GGCATTCGCT ACAAGACCCT TACCTGAATA CCTTGCGTAA AGAGAAGGTC GGGGTATCGA TCTATCTGGT CAACGGTATC AAGCTGCAGG GTACGATCGA GTCTTTCGAC CAGTTCGTCA TTTTGCTGAA GAACACGGTC AGCCAGATGG TCTACAAACA CGCCATTTCC ACCGTCGTAC CGGTTCGTCC GATCCGCCTG CCAAGCGCTA CAGACGCTGA CGGCGCGGAC GCCGAGCCAG GTAACGCCTG A
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Protein sequence | MSKGHSLQDP YLNTLRKEKV GVSIYLVNGI KLQGTIESFD QFVILLKNTV SQMVYKHAIS TVVPVRPIRL PSATDADGAD AEPGNA
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