| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0544 |
|---|
| Symbol | |
|---|
| ID | 3366020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 615173 |
|---|
| End bp | 617062 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637650884 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_233652 |
|---|
| Protein GI | 66043811 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATAA AAGCAAAAAA CGCAGCCCAT TTGCGCGAGT CGGCGCAGGT CGATTCCGGA
TCGGTACAGC CGTTTACCCG TTCGCAGAAA ATCTACGTTC AGGGCTCGCG CCCGGACATC
CGCGTGCCGA TGCGCGAAAT CACCCTGGAT GTCACCCCGA CTGACTTTGG CGGCGAGATC
AACGCCCCGG TCACGGTCTA TGACACCTCG GGGCCCTACA CCGACCCCAA TGTGATCATC
GACGTGCGCA AAGGCCTGGC TGACGTGCGC TCGCCATGGA TCGACTCGCG CAATGACACC
GAGCGTCTGC CGGGCCTGAG TTCCAACTTC GGCCAGCAAC GCCTGAGCGA TGCCGAGCTC
ACCGCGCTGC GCTTTGCCCA TGTGCGCAAC CCGCGCCGGG CCAAGGCCGG TGCCAACGTC
AGCCAGATGC ACTATGCGCG TCAGGGCATC ATTACCGCCG AGATGGAATA CGTCGCCATC
CGCGAGAACA TGAAGCTTCA GGAAGCCCGC GCCGCAGGTC TGCTGACCCA GCAACATGCC
GGGCACAGCT TTGGCGCGAG TATTCCGAAG GAAATCACTG CCGAGTTCGT GCGTGAAGAG
ATTGCCCGGG GCCGCGCGAT CATCCCGGCC AACATCAACC ACGTCGAGCT TGAGCCGATG
ATCATCGGCC GCAACTTCCT GGTGAAGATC AACGGCAACA TCGGCAACAG CGCACTGGGC
TCTTCCATTG AAGAAGAGGT CGCCAAGCTG ACCTGGGGTA TCCGCTGGGG CTCGGACACG
GTCATGGACC TGTCCACCGG CAAGCACATT CACGAAACCC GTGAGTGGAT CATCCGCAAT
TCGCCGGTGC CGATCGGTAC GGTGCCGATC TATCAGGCGC TGGAAAAAGT GGGGGGTGCA
GCCGAGGACC TGACCTGGGA GCTGTTCCGC GACACGCTGA TCGAGCAGGC CGAGCAGGGC
GTCGATTACT TCACCATCCA CGCCGGAGTG CTGCTGCGTT ACGTGCCGCT GACCGCCAAG
CGTGTCACCG GTATCGTCAG CCGTGGCGGT TCGATCATGG CCAAATGGTG CCTGGCGCAC
CACAAGGAAA ACTTCCTTTA CACCCATTTC GAAGACATCT GCGAAATCAT GAAGGCCTAC
GACGTCAGCT TCTCGCTGGG CGACGGCCTG CGTCCGGGCT CGATTGCCGA CGCCAACGAT
GCGGCGCAGT TCGGCGAACT GGAAACGCTT GGCGAACTGA CCAAGATTGC CTGGAAACAT
GACGTGCAGA CCATGATCGA AGGCCCCGGC CATGTGCCGA TGCAGTTGAT CAAGGAAAAC
ATGGACAAGC AGCTGGAATG CTGCGACGAA GCGCCGTTCT ACACCCTGGG CCCGCTGACC
ACCGACATCG CGCCGGGTTA CGACCACATC ACCTCGGGCA TCGGCGCGGC CATGATCGGC
TGGTTCGGCT GCGCCATGCT GTGTTACGTC ACGCCCAAGG AGCATCTGGG GCTGCCGAAC
AAGGATGACG TCAAAACCGG GATCATCACC TACAAGATCG CGGCCCATGC GGCGGACCTT
GCCAAAGGCC ACCCGGGTGC GCAGATCCGT GACAACGCGT TGAGCAAGGC GCGTTTCGAG
TTCCGCTGGG AAGACCAGTT CAACCTCGGC CTGGACCCGG ACACCGCGCG TTCGTACCAC
GACGAAACCC TGCCCAAGGA TTCGGCCAAG GTCGCGCACT TCTGCTCCAT GTGCGGGCCG
AAATTCTGCT CGATGAAGAT CACTCAGGAA GTCCGCGAGT ACGCCGCCAA CCAGCGCATC
GAGGCGGTAG ACGTCGATGT CGCCAAGGGC CTGGCCGAAC AGGCCGAGCG CTTCAAGCAG
GAGGGTAGTC AGCTGTACAA GAAGGTGTAA
|
|---|
| Protein sequence | MSIKAKNAAH LRESAQVDSG SVQPFTRSQK IYVQGSRPDI RVPMREITLD VTPTDFGGEI
NAPVTVYDTS GPYTDPNVII DVRKGLADVR SPWIDSRNDT ERLPGLSSNF GQQRLSDAEL
TALRFAHVRN PRRAKAGANV SQMHYARQGI ITAEMEYVAI RENMKLQEAR AAGLLTQQHA
GHSFGASIPK EITAEFVREE IARGRAIIPA NINHVELEPM IIGRNFLVKI NGNIGNSALG
SSIEEEVAKL TWGIRWGSDT VMDLSTGKHI HETREWIIRN SPVPIGTVPI YQALEKVGGA
AEDLTWELFR DTLIEQAEQG VDYFTIHAGV LLRYVPLTAK RVTGIVSRGG SIMAKWCLAH
HKENFLYTHF EDICEIMKAY DVSFSLGDGL RPGSIADAND AAQFGELETL GELTKIAWKH
DVQTMIEGPG HVPMQLIKEN MDKQLECCDE APFYTLGPLT TDIAPGYDHI TSGIGAAMIG
WFGCAMLCYV TPKEHLGLPN KDDVKTGIIT YKIAAHAADL AKGHPGAQIR DNALSKARFE
FRWEDQFNLG LDPDTARSYH DETLPKDSAK VAHFCSMCGP KFCSMKITQE VREYAANQRI
EAVDVDVAKG LAEQAERFKQ EGSQLYKKV
|
|---|
| |