| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0404 |
|---|
| Symbol | |
|---|
| ID | 3365880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 434688 |
|---|
| End bp | 435263 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637650744 |
|---|
| Product | fimbrial assembly |
|---|
| Protein accession | YP_233512 |
|---|
| Protein GI | 66043671 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3166] Tfp pilus assembly protein PilN |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGGA TCAACTTATT ACCGTGGCGC GAAGAGCTTC GCGAAGAACG AAAGAAACGC
TTCCTGACTG CCTTGGTCGG CGTGTTGGTG GTATCAGTCG GCATTCTGTT TCTGATCGAT
CGGTACGTCA GCAACGCCCT CGAGCATCAG ATGGCGCGCA ATGCGTTTCT GCAGACACAG
ATTGCCCAGC TCGATATCCG CATCAAGGAG ATCAGTGATC TCAAGGCCCG TCGCAAGCAA
CTGCTCGAGC GCATGAAGAT CATTCAGGAC CTGCAAGGCA ACCGCCCGAT CACCGGGCGC
GTCTTCGATC AACTGGCGCG GACCCTGCCG GATGGCGTCT ATTACTCGCA GGTCAAAATG
ACCGACAAGC TGATCGCCAT CAATGGTGCT GCCGAGTCGA ACAACCGGGT TTCCGACCTG
ATGCGTAATC TTGAAGCTTC CGACTGGCTG GAAGCGCCGA GCCTGACCGA GGTCAAGGCC
ACGACCGCCG GTGCTGTGGA TCAGGCCAAC GTCTTTCAGT TGACCGTACG CCAGACCCAG
CCACCGGTTG CCGCTGCCGC AGGAGCCAAG CCATGA
|
|---|
| Protein sequence | MARINLLPWR EELREERKKR FLTALVGVLV VSVGILFLID RYVSNALEHQ MARNAFLQTQ
IAQLDIRIKE ISDLKARRKQ LLERMKIIQD LQGNRPITGR VFDQLARTLP DGVYYSQVKM
TDKLIAINGA AESNNRVSDL MRNLEASDWL EAPSLTEVKA TTAGAVDQAN VFQLTVRQTQ
PPVAAAAGAK P
|
|---|
| |