| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0344 |
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| Symbol | |
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| ID | 3365820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 366781 |
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| End bp | 367899 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637650686 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_233454 |
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| Protein GI | 66043613 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.525441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTTC GTATTTCAAG ACTGGTTACG TTCGGTCTGG CCGCTGCCTT GGCGGCGCTG
GCGGGCTGTG GCGAGGAAAA ACCGGCGGCG CCCGAACTGC CCAGGGTTTA CGTGCAGACG
GTAAAAAGTG CCGACTTCGC CGCCAGTGTC GCCCTGACCG GTGATGTTCA GGCGCGGGTG
CAGACCCGCC TGTCTTTCCG GGTCAATGGC AAGATCATTC AGCGTAACGT CGATGTGGGC
GACCGGGTCA CTGCCCGGCA GGTGCTGGCG CGGCTCGATC CGAAGGATCT GCAGACCAAT
GTCGATTCGG CCGCTGCTGC TGTGGCGGCC GAACAGGCCC GCGTGAGCCA GTCCCGCGCT
GCGTTTGTCC GTCAGCAAAA GCTGCTGCCC AAGGGTTATA CCAGTCGCAG CGAATATGAC
TCGGCCCAGG CCGCCGTGCG TGGCAGCGAG AGTTCGTTGA AAGCGGCGCA GGCGCAACTG
GCCAATGCTC GCGAGCAACT GGGTTATACC GCTCTGGTCG CTGACGCGCC GGGTGTGATC
ACCGCGCGTC AGGCTGAAGT CGGGCAAGTG GTGCAGGCCA CCATGCCGAT TTTCGATCTG
GCGCGCGACG GTGATCGCGA TGCGGTGTTC AATGTCTACG AGTCGCTGTT CGTTCAGCCG
CCGACCAATC AGGCCGTGCA GGTCACGTTG CTCGATAACC CGAACATCAA GGTCAGCGGC
AAAGTGCGCG AAGTAACCCC GGCGGTGTCG GCGCAGACCG GTACCTTGCA GATCAAGATT
GCCCTGGACC CGCTGCCTGA AGGCATGGAC CTGGGCTCGG TGGTCAGCGT GGCGCTGAGC
GCACCGGCCA ACGCCAGTGT CGAGTTGCCA TGGGCGGCGC TGACCAAGGA CCTCGGCGAA
CAGTTGGGCA AGCCTGCCGT ATGGGTGGTG GACGAGCAGG GCAAGGTCAA TCTGCGCAAG
GTCACCGTTA CCCGTTACCT GACGTCCAAA GTCATCATTG GCGACGGGCT CAAGAGTGGA
GAGAAAGTTG TGGTGGCAGG CGGACAGTTG TTACACCCGG ACATGCAGGT CGACATTGCC
GAACAGCCCA AACCACAGAA TGCACAGGTG CAGCCATGA
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| Protein sequence | MPVRISRLVT FGLAAALAAL AGCGEEKPAA PELPRVYVQT VKSADFAASV ALTGDVQARV
QTRLSFRVNG KIIQRNVDVG DRVTARQVLA RLDPKDLQTN VDSAAAAVAA EQARVSQSRA
AFVRQQKLLP KGYTSRSEYD SAQAAVRGSE SSLKAAQAQL ANAREQLGYT ALVADAPGVI
TARQAEVGQV VQATMPIFDL ARDGDRDAVF NVYESLFVQP PTNQAVQVTL LDNPNIKVSG
KVREVTPAVS AQTGTLQIKI ALDPLPEGMD LGSVVSVALS APANASVELP WAALTKDLGE
QLGKPAVWVV DEQGKVNLRK VTVTRYLTSK VIIGDGLKSG EKVVVAGGQL LHPDMQVDIA
EQPKPQNAQV QP
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