Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0154 |
Symbol | |
ID | 3365630 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 166777 |
End bp | 168618 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637650497 |
Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal |
Protein accession | YP_233265 |
Protein GI | 66043424 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.225579 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCAGT TGATTCGTGT GCAAGACCTG CGCGTGGTTG CCGATGGCGA CCACGGCGAG CTGGAGATCG TCAAAGGCGT CAGCTTTGCG CTGGAAAAAG GTGAAGTGCT GGCACTGATC GGCGAGTCGG GCTCCGGCAA GACCACCATC GCGCTGGCCC TGCTCGGTTA CGCCCGACGC GGTTGCAAGC TGGCCGGCGG GGTGGTTCAA GTGGGCGCGC ACGACATGCT CAGCCTGCCC GAAAGCCAAT TGCAGGGCCT GCGTGGCAAC CGCGTGTCCT ACATTGCGCA AAGCGCCGCA GCCGCCTTCA ACCCGGCGAA AAAGCTGATC GATCAGGTGA TCGAGGGCGC GCTGATTCAT GGTCTCGGCA GCCGTGCGGA ACTGGAAGCC AAGGCCGTCG AGCTGTTCCG CGACCTGGCC CTGCCCAATC CGGAAAGCAT CGGCCGGCGT TACCCGCATC AGGTCTCGGG CGGCCAGTTG CAGCGCGTCA TGGCGGCCAT GGCGCTGATC AGTGATCCGT TGCTGGTGAT CCTCGATGAG CCGACCACCG CACTGGACGT CACCACGCAG ATCGACGTGC TGCGCGCGTT CAAGCGGGTG GTGCGCGACC GGGGTGCCAC CGCGGTCTAT GTCTCCCACG ACCTTGCGGT GGTGGCGCAG ATGGCCGATC AGATCGTGGT ACTCAACGGC GGGCGGATCA TCGAACAAAG CAGCACCGCC GCGCTGCTCA AGGGGCCAGT GGACGCCTAC AGCCGCAGCC TGCTGGCGGC GGCGCGTCCG GATAAAGTGC TGAGCCCGGC CAGCGAGGTG GTCAAGGACA GCACGCTGCT GACCATCAAG GGCCTGACGG CGGGTTACGG CAAAAAGAAC CTGCAGGGCA TGCCGATGAT TCGCGTGCTG GAAGACATCG ACCTGACTAT CCGCCGTGGT CAGGCCATCG GCGTGATCGG CGAGTCGGGC TCGGGCAAAT CGACGCTGGC CCGAGTGGTC GCCGGTCTTC TGGACCCGGC GCATGGCAGC CTGACGTTCG ACGGAGCCGA CTTGTCCGGC ACCCTGGCGG GTCGTACCGA AGAACAGTTC CGGCGCATTC AGATGGTGTT TCAGAACGCC GACACCGCGC TCAATCCGAT GCACAGCATC AGCGCGATTC TGGCGCGCCC GCTGAAGATG TATTTCGGTC TGAAGGGCAG GGCTCTGCGC GAGCGCATCG ACGAACTGAT GGACCTGGTG CGCCTGCCCC GCGAGCTGGC CGAGCGGCGT CCCAACGAAC TGTCGGGCGG GCAGAAACAG CGCGTCAACC TGGCGCGCGC GCTGGCGGCC AAGCCGGACC TGATCCTCTG CGATGAAGTG ACCTCGGCGC TGGATACTGT GGTCGGTGCC TGCATCCTCG AGCTGCTCGG CGAACTGCGC CGCAAGCTCG GGGTTTCCTA CCTGTTCATC AGCCACGACA TCTCCACCGT GCGCGCGCTG TGCGACGACA TCGTGGTGAT GTACAGCGGC CACAAGGTCG AAGAGGGCAG CCGCGAAGCC TTCAGCCGTG TGCCGTTCCA CCCTTACACC GATCTGCTGG TGCATTCGGT GCCGGAACTG CGTCAGGGCT GGCTGGAAAC CTGCGGTGTG ACCAGCGGCA ACCTGCCGCC CATCAGCGCA CCGGCCAACA ATCCGGAGCT GTGCACCTTC CTCAATCGCT GCCCGGCCCG CATCGAAGGC CTGTGCAACA AGACCGCGCC GGGCCGTCGC CTGATCGCAG GGGGCAGCGA GATCCTTTGC CACCGCGACA GCGACGAGCT GCAGGCCGTG CAAGAAAACC TGAATCCTGA AACCGTGGGA GCTTACGCAT GA
|
Protein sequence | MSQLIRVQDL RVVADGDHGE LEIVKGVSFA LEKGEVLALI GESGSGKTTI ALALLGYARR GCKLAGGVVQ VGAHDMLSLP ESQLQGLRGN RVSYIAQSAA AAFNPAKKLI DQVIEGALIH GLGSRAELEA KAVELFRDLA LPNPESIGRR YPHQVSGGQL QRVMAAMALI SDPLLVILDE PTTALDVTTQ IDVLRAFKRV VRDRGATAVY VSHDLAVVAQ MADQIVVLNG GRIIEQSSTA ALLKGPVDAY SRSLLAAARP DKVLSPASEV VKDSTLLTIK GLTAGYGKKN LQGMPMIRVL EDIDLTIRRG QAIGVIGESG SGKSTLARVV AGLLDPAHGS LTFDGADLSG TLAGRTEEQF RRIQMVFQNA DTALNPMHSI SAILARPLKM YFGLKGRALR ERIDELMDLV RLPRELAERR PNELSGGQKQ RVNLARALAA KPDLILCDEV TSALDTVVGA CILELLGELR RKLGVSYLFI SHDISTVRAL CDDIVVMYSG HKVEEGSREA FSRVPFHPYT DLLVHSVPEL RQGWLETCGV TSGNLPPISA PANNPELCTF LNRCPARIEG LCNKTAPGRR LIAGGSEILC HRDSDELQAV QENLNPETVG AYA
|
| |