Gene Psyr_0136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0136 
Symbol 
ID3365612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp145279 
End bp145986 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content64% 
IMG OID637650479 
ProductMotA/TolQ/ExbB proton channel 
Protein accessionYP_233247 
Protein GI66043406 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.638399 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCAT CGCTCTCTTC CATGATCGTC CCCGCCGTGC TCTGGGCACT GATTCTGTTT 
TCCGTATTGA GTTGGGCACT GTTGCTGATC AAGTCGGCGC AGTACGTCCG CCAGAAGTCC
CAGAACAAGC AATTCACCAA AGCCTTCTGG AGCGCACCGG ACCTGCTCAC TGCGGCCGAG
CACTCCGCGC AATACCCCGG CGCGCTGGCG CGTATTGCCA ACAGCGGCTT CGAAGCCATG
GCGGTTGACG AGTCGCCGCG CACCACGCAA CAACTGGCGC ACACCATCAA CCGCTCGGAC
CGTCTGGAGC GCAACCTGCG CCAGCAGATA CAGAAAGAGC GTCGCGCGCT GGAAAGTGGC
CAGGCGATTC TCGCCAGTAT CGGCAGCACC GCGCCCTTCA TCGGCCTGTT CGGTACGGTC
TGGGGGATCA TGGAAGCGCT GCAAAGCATC GGCGTGACCG GCTCGGCCAG CCTCGAAGCG
GTCGCCGGCC CCATCGGTCA TGCGTTGGTC GCCACCGGTG TGGGTATCGC CGTCGCCGTG
CCGGCAGTGC TGATCTACAA CTTCTTCCTG CGCCGCCTCA AGCTCGCCGT GGCCGACATG
GATGACTTCG CCCACGACTT CGACGCCCTC GCCCAGCGCA GCGCCTTTGC CGTTACACGC
CAGCCCATCG CCAGCAAGAA TGGTCATGCC GTTCGGGAGG CCAGCTAA
 
Protein sequence
MNASLSSMIV PAVLWALILF SVLSWALLLI KSAQYVRQKS QNKQFTKAFW SAPDLLTAAE 
HSAQYPGALA RIANSGFEAM AVDESPRTTQ QLAHTINRSD RLERNLRQQI QKERRALESG
QAILASIGST APFIGLFGTV WGIMEALQSI GVTGSASLEA VAGPIGHALV ATGVGIAVAV
PAVLIYNFFL RRLKLAVADM DDFAHDFDAL AQRSAFAVTR QPIASKNGHA VREAS