Gene Psyr_0124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0124 
Symbol 
ID3365600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp133779 
End bp135326 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content61% 
IMG OID637650467 
Producthemolysin-type calcium-binding region 
Protein accessionYP_233235 
Protein GI66043394 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.968152 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAGA CAGTCGACAT CAAGGACGTC ACCAATCCCA CGGCGCTTGC GAACTTGCAA 
GTCGCGAGGG CCACTAGCCA GGTCAGTAAC AACCCGATCG AACTCATCGT GCAGGGCACT
CCTGGCAACG ACTCCCTACG CGGTGGGCTG GCCAATGAAC TGCTGATGGG TGGGGACGGT
AACGACTATA TAGTCAGCGG GGGTGGCAAC GATGTGATGG TCCCCGGTGC CGGAGCCGAC
TCCTTGAGCG GCGGCGCCGG CAACGATGTA TTCCGCTTCG AGCGCATCAG CGACAGCTAT
ATCAATGGCG CAGGTGAGTC CACCGATTCC ATCAGCTATT TTGACCCCGC CCACGATATT
CTCGACGTGT CGGCCCTGGG CTATAGCCAT TTAGGCAACG GCTATGGCGA TACCCTGCAC
ATTCGTAGCG AGCCTTTGCG CGGTATTTAC TTTCTGGAAA GCTACGAGCG GGACCAGAAC
GGCCATCGTT TTGCCGTGCA GTTTCTGGCC AACAGCGGCG TTATTACCGA TGCCAACCTG
CAACCGCTGA TCAACGGTAC CTCGCAGAGC AACCTGCTGG TGGGCACCGA CGGCAGCGAA
ACGCTCAAGG CCGGCGCTGG CCGCGACACC GTCGAAGCGG GTGCGGACAA TGACCGGCTA
TTCGGCGGCG CCGGCGGCGA CACTCTGAGC GGCGGCGCGG GTGCCGACAC CTTCGTGTAT
ACCCGGCTCA GCGACAGCTA CCGCAACGAT GCCAGTGGCA GCTACAGCAG CCGCGACCTG
ATCACCGACT TCAGTGGCAA CGGCCATGAC ATGATCGACG TGTCCGCGTT GGGCTTCACC
GGGCTGGGTA ACGGCTACAA CGGTACGCTG AAGGCGGTTC TCAACCTCGC CGGCGATGCT
ACCGCGCTTA AATCATTAGA GGCCGATGCC AACGGTAACC GCTTCGAAAT TCTGCTCAGT
GGCAACCATG TCAATGAGCT CAACGCCAGC ACTGTGCTGT TCGCCCCGCC CAGTGATGCG
ACGGTTGTGA CCAGCCCGCA GCCGATCACC CCGGTGAATC TGGCAGGCGG TGATAAGTCC
GAAAAGCTTT ATGGTTACTG GGGCAACGAT ACCCTGGCCG GTGGCGCCGG AAACGACATC
CTCGAGGGCA ACGCCGGTGA CGACGTGCTG ACCGGTGGGT TGGGCGCGGA CAAGCTCACC
GGCGGCACAG GCAACGACCG TTTCGTGTTC ACTAGCAGCG CCGACAGCCA TGCCGGCAGC
AGCGACCTGA TCACTGATTT CATCTGGGGC CAGGACAAGC TCGACGTCGC TGCGCTCGGC
GTGACCGGTT TTGGCAACGG CCGCGACGGC ACCTTGAGCA TGACCTACGA TGAAAACACT
GACCGTACCT ACCTGCGCAG TCGCGAGCCA GGCGCCGATG GGCATGCTTT CCAGGTCACG
CTAGTAGGGT TCGACTACAC GCGAGAGCTC ACCAACGCCG ACCTGGTGGT TGCCGATACG
GCAGACGTGG CGCTGGTTGG TCAAACCGCC GTCGACCTCG CGAGCTGA
 
Protein sequence
MTQTVDIKDV TNPTALANLQ VARATSQVSN NPIELIVQGT PGNDSLRGGL ANELLMGGDG 
NDYIVSGGGN DVMVPGAGAD SLSGGAGNDV FRFERISDSY INGAGESTDS ISYFDPAHDI
LDVSALGYSH LGNGYGDTLH IRSEPLRGIY FLESYERDQN GHRFAVQFLA NSGVITDANL
QPLINGTSQS NLLVGTDGSE TLKAGAGRDT VEAGADNDRL FGGAGGDTLS GGAGADTFVY
TRLSDSYRND ASGSYSSRDL ITDFSGNGHD MIDVSALGFT GLGNGYNGTL KAVLNLAGDA
TALKSLEADA NGNRFEILLS GNHVNELNAS TVLFAPPSDA TVVTSPQPIT PVNLAGGDKS
EKLYGYWGND TLAGGAGNDI LEGNAGDDVL TGGLGADKLT GGTGNDRFVF TSSADSHAGS
SDLITDFIWG QDKLDVAALG VTGFGNGRDG TLSMTYDENT DRTYLRSREP GADGHAFQVT
LVGFDYTREL TNADLVVADT ADVALVGQTA VDLAS