| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0120 |
|---|
| Symbol | |
|---|
| ID | 3365596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 130166 |
|---|
| End bp | 130936 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637650463 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_233231 |
|---|
| Protein GI | 66043390 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.65432 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGA TACCGGAACT GAACAGCGAC GCTAACGTGC TGATATGCGG AGCCAGCCGA
GGTATCGGCC TGGCACTGTG CGCGGCGTTG CTTGCTCGCG ATGATGTGGC TCAGGTATGG
GCGGTGGCGC GAAAAGCCAG CACCTCCACA GAACTGGCAA CGCTTGCAGA GCAATATGGC
CAACGCATCA AACGCGTCGA CTGCGACGCG CGCAATGAAC AATCCCTCGA AGCACTCGTG
AGCGAGACGC TTGATGGGTG CGATCATCTG CACCTGGTCA TCAGTACGCT AGGTATTCTC
CATCAGGACG GCGCAAAAGC AGAAAAGGGC CTGGCACAAC TGACACTTGC GAGCCTGCAA
GCGAGTTTCG CGACCAACAC CTTTGCACCG ATCCTGCTGC TCAAACACCT ACTCCCGCTA
TTGCGCAAAC AACCTTCAAC CTTCGCGGCG CTCTCCGCGA GGGTTGGCTC TATTGGCGAT
AACCGCTTGG GTGGCTGGTA CAGCTACAGA GCCAGCAAAG CAGCGCTCAA CCAGTTGCTG
CACACGGCCA GTATCGAATT GAAACGCCTC AACCCGGCCT CTACTGTCCT GGCAATACAC
CCAGGCACGA CTGACACGGA GCTGTCTCAG CCATTTCAGG CGAACGTACC CGAAGGCCAA
CTGTTCGAAC CGGCGTTCTC GGCGGAGCGC ATCATTGAGG TGGTAGGCGC GCATGGACCG
GCCGACAGCG GGACCTTTTG GGCCTGGGAC GACAAGCCGA TTGTCTGGTG A
|
|---|
| Protein sequence | MSLIPELNSD ANVLICGASR GIGLALCAAL LARDDVAQVW AVARKASTST ELATLAEQYG
QRIKRVDCDA RNEQSLEALV SETLDGCDHL HLVISTLGIL HQDGAKAEKG LAQLTLASLQ
ASFATNTFAP ILLLKHLLPL LRKQPSTFAA LSARVGSIGD NRLGGWYSYR ASKAALNQLL
HTASIELKRL NPASTVLAIH PGTTDTELSQ PFQANVPEGQ LFEPAFSAER IIEVVGAHGP
ADSGTFWAWD DKPIVW
|
|---|
| |