| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0101 |
|---|
| Symbol | |
|---|
| ID | 3365577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 112987 |
|---|
| End bp | 113487 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637650445 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_233213 |
|---|
| Protein GI | 66043372 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTTG ATGCGTATTT GAAAATCGAC GGAATTCCAG GTGAAGCTCT TGACGCTCAA
TTTAAGGACT GGATCGAAAT GGAAAATTTC GACCTAGGAG CAAGCCAGTC CGCCTCGGTC
ACTGCGACCA GTGCAGGCGG AGCAACGAGT GGTCGTGCTC GTATGAGTGA CCTCTTCTTC
CGCAAAACTG TGGACAAAGC CACCCCAAAG CTGCACGAAG CCTGCTGCAG TGGAAAGCAC
TTCAAAGAGG TCACACTCGC GGTCAACCGT GCAGGAACAG ACAAGCTCAA ATATTTGGAA
ATAGTACTTG AAGAGGTCAT TATTTCCTCC GTTTCACTTA ACGGTAACGG AGGTGTAGAG
GGCGGCTTTC CCACAGAAAC GGTACGTCTG AATTATGGCC GTATCAAAAT GACCTATACA
CAACAAAAAC GTGCAGATGG GCAAGGTGGC GGCCAGGTCG TAGGCGGTTG GGATGCCATT
TCCAACAAGG TATACGCCTG A
|
|---|
| Protein sequence | MAFDAYLKID GIPGEALDAQ FKDWIEMENF DLGASQSASV TATSAGGATS GRARMSDLFF
RKTVDKATPK LHEACCSGKH FKEVTLAVNR AGTDKLKYLE IVLEEVIISS VSLNGNGGVE
GGFPTETVRL NYGRIKMTYT QQKRADGQGG GQVVGGWDAI SNKVYA
|
|---|
| |