| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0086 |
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| Symbol | |
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| ID | 3365561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 91808 |
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| End bp | 93727 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637650429 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_233198 |
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| Protein GI | 66043357 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATT ATTCCCGTAA CGCGCTGCGA ACCGCCGTTC TGTATGGGCT ACTGTCGATT
CTGTGGTTCG CGACAGGCAG CGCCCTGCTG TCTTTTTTCG TCAAGGATCC GGCTCGACTG
GCCGTCGGAC AACAGATGAT CGGTTACGGC TGGGCGTTGC TCAGTACCGT CATGATCTTT
ATTGCACGTG ACAGATTGAA GGCCATCGTC GGCGGCGAAG CGCTGTTCGA GCGTCAACAG
CAGGACTATG ACCGGCTGCT GCTGGCGGCG GTGGTGTTCG ACAGCACGCG TGAGGGCGTA
CTGGTCAGTG ATGCCGAAGG GCGCATTGTC CATGTAAATC GTGCGTTTGT GGACATCACC
GGCTATCAGG CCGACGAGGT GCTGGGCTTC AACCCCAGCA AGTTCAAGTC CGGTCGTCAT
GGCCCCGAGT TTTATCGGCA GATGTACCAC TCGCTGCAGA GTGCCGGGCA GTGGAGCGGC
GAGATCTGGA ACCGACGCAA AAGCGGCGAG ATCTATCCGC AGTGGCAAAC CATCCGCAGC
ATCAAGGGTG AGGACGGGCA GCCCAGGCAT TTTGTCGCGG TGTTTTCCGA CATCACGGCC
ATCAAGCGCT CCGAGCAGGA GTTGGCGCAA CTGGCCCATT ACGATGCGCT GACCGAGTTG
CCCAATCGTC TGCTGCTGAC CGACCGGATC AGCCAGGCGC TGACCTCGGC GCGCTCCAGC
AGGCGCGGCT GTGCGCTGCT GGTGGTCGAC CTGGACAACT TCAGAAACAT CAACGACAGC
CTTGGCCATA ACATCGGCGA CGAAGTGCTC AAGGCGGCTG CCGAACGTCT CAATGCGCTG
GCCGACAGCG GCATGACGGT CTCGCGGCTG GGCGGTGACG AATTCGCGCT GCTGGTCAAA
AACTGTACAC ACATGGTGCA TGCCGCAGCG CTCGCGCAGC AGGTGATCAA TGCCTTCAAA
GCGCCGTACC CCATTGCCGG GCACCAGCTG TTCGTCACTG CCAGTATCGG TATCAGCCTG
TTTCCCGGTG ATGCGCTGAC TGCCGAGCAG TTGTTGCGCA ATGCCGATTC GGCGCTGTTC
AAGGCCAAGA CCGATGGCCG CGAAGGGTTT GCGCTGTACA CCGAAGAGCT GACCGCCCAA
GCCCAGCAAC GCGTGCAACT GGCCAGCGAG TTGCGTCAGG CGATCGAGCA GGACGAGTTG
CGGGTCTTCT ACCAACCGGT TTACGACCTG GTGACCGGGC GTATCTGCGC GGTCGAAGCG
CTGGTGCGCT GGCAACATCC GACCCGTGGC ATGGTGTCAC CTGGCGATTT CATCCCGATT
GCCGAGCAGA ACGGGCTCAT CGCCGATATC GATGCCTGGG TATTGAACAC CGCCTGTCGG
CAGATGCAGG CCTGGCTGGC AGAAGGCGTC TCGATTGCGT CCGTCGCGGT CAATGTGTCC
AGCCGTCTGT TCAGTCGTGG TGATGTCGAT CGGCAAGTGG CTGAGGTCTT GAACGAGACC
GGCCTTGATC CGGCATTTCT TGAGCTGGAA GTCACCGAAA GTGCCGTCAT GGAGGACCCT
GAACAGGCCA TCGAGCAACT GCATCGTCTG CGTGAACTGG GCCTGAGCCT GGCTATCGAT
GATTTCGGCA CAGGCTACTC ATCGCTGCTG CGGCTCAAGA GCATGCCGGT GCAGAAGCTC
AAGATCGACC AGGGTTTCGT GGCCGGACTG CCGGGCGATG TGGATGACAT CGCGATCGTC
CGGGCGGTCA TCGCGCTGGC TTCGAGCCTG GGCATGCGTG TACTGGCCGA GGGGATCGAG
CACGCCAATC AGGCTTCATT TCTGTTAAGC AACGGTTGCG AGCTGGGCCA GGGCTACTGG
TTTGCCCGGC CCATGGCGGC ACAATCGATT GATTGGACGC ACGCGCCCGC GTTCAACTAG
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| Protein sequence | MSDYSRNALR TAVLYGLLSI LWFATGSALL SFFVKDPARL AVGQQMIGYG WALLSTVMIF
IARDRLKAIV GGEALFERQQ QDYDRLLLAA VVFDSTREGV LVSDAEGRIV HVNRAFVDIT
GYQADEVLGF NPSKFKSGRH GPEFYRQMYH SLQSAGQWSG EIWNRRKSGE IYPQWQTIRS
IKGEDGQPRH FVAVFSDITA IKRSEQELAQ LAHYDALTEL PNRLLLTDRI SQALTSARSS
RRGCALLVVD LDNFRNINDS LGHNIGDEVL KAAAERLNAL ADSGMTVSRL GGDEFALLVK
NCTHMVHAAA LAQQVINAFK APYPIAGHQL FVTASIGISL FPGDALTAEQ LLRNADSALF
KAKTDGREGF ALYTEELTAQ AQQRVQLASE LRQAIEQDEL RVFYQPVYDL VTGRICAVEA
LVRWQHPTRG MVSPGDFIPI AEQNGLIADI DAWVLNTACR QMQAWLAEGV SIASVAVNVS
SRLFSRGDVD RQVAEVLNET GLDPAFLELE VTESAVMEDP EQAIEQLHRL RELGLSLAID
DFGTGYSSLL RLKSMPVQKL KIDQGFVAGL PGDVDDIAIV RAVIALASSL GMRVLAEGIE
HANQASFLLS NGCELGQGYW FARPMAAQSI DWTHAPAFN
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