Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0028 |
Symbol | |
ID | 3365503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 31768 |
End bp | 32694 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637650371 |
Product | substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_233140 |
Protein GI | 66043299 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGT TATCCACAGC CGTTGCGGTC GCGGTCATGA CCCTCGGCAG CCTTGCAGCA CAGGCAGAGG ACGCCAGTTG CAGCACCGTG AAGATGGCCG ATCCCGGCTG GAGTGACATT GCGGCCACCA ACGCCATTAC CAGCGTGGTA CTCGAAGGTC TGGGCTACAC GCCCAAGGTC GATACCCTGG CCGTGCCGAT CGCCTATGGC GGTTTGAAAG ACGGCAAGCT GGATGTGTTT CTGGGCAACT GGATGCCGGC GCAGCAGGGC TTCTACGACA AGTTCGTGGC CACCGGCGAT GTGACGCAAC TGGCGAAAAA CCTGGAGGGC ACCGAATTCA CCCTGGCCGT GCCGGATTAC GTCTGGGATG CCGGTGTGCA TGACTTTGCC GACCTGAGCA AATTTGCTGA CAAGTTCGAC AAGAAGATCT ATGGCATCGG TTCTGGCGCG CCTGCCAACC TGTCTTTGCA GGAGATCATC AAGAAGAACG AATTCGATCT GGGCAAATGG AAGCTGGTGG AATCCAGCGA AACCGCGATG CTTGCCGAGG TCAATCGCAA CGTGAAGAAA AAGGCCTTTG TGGTGTTCCT CGGCTGGACG CCGCACCCGA TGAACGTGCA GATCAAGGGC ATGCACTACC TCAAGGGCGG CGAGAAATAC TTTGGTGACA CCGGCTCGGT CTTTACACTG ACCCGCAAAG GTTATGCTCA AGCCTGCCCG AACGTCGGCA AGCTGCTGAC CAATCTGAGC TTCACCCTGG ACATGGAAAA CAGCATCATG GCCGAGGTGG TCAACAAGAA GGTCAGCAAC AGCGAGGCGG CAAAGTCCTG GATCAAGGCC AACCCGACGG TGCTGGACAA GTGGCTGGAG GGCGTGAAGA CGGTTGATGG CAAGGACGGG CTGGCAGCAG TGAAGGCGAA GTTGTAG
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Protein sequence | MKKLSTAVAV AVMTLGSLAA QAEDASCSTV KMADPGWSDI AATNAITSVV LEGLGYTPKV DTLAVPIAYG GLKDGKLDVF LGNWMPAQQG FYDKFVATGD VTQLAKNLEG TEFTLAVPDY VWDAGVHDFA DLSKFADKFD KKIYGIGSGA PANLSLQEII KKNEFDLGKW KLVESSETAM LAEVNRNVKK KAFVVFLGWT PHPMNVQIKG MHYLKGGEKY FGDTGSVFTL TRKGYAQACP NVGKLLTNLS FTLDMENSIM AEVVNKKVSN SEAAKSWIKA NPTVLDKWLE GVKTVDGKDG LAAVKAKL
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