| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNI03860 |
|---|
| Symbol | |
|---|
| ID | 3259508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006694 |
|---|
| Strand | + |
|---|
| Start bp | 1040053 |
|---|
| End bp | 1043033 |
|---|
| Gene Length | 2981 bp |
|---|
| Protein Length | 827 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | 638258881 |
|---|
| Product | chitinase, putative |
|---|
| Protein accession | XP_572898 |
|---|
| Protein GI | 58271484 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3325] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTTTATCTCT TTCAACCCCT TTATCTGGTA ATCCTTCGCA GTCCTTCCCT CACCTTCTTC
TTTTATCCCT CTTTGCCCAA GGGGCCCACA TTCTCTATAA TTTAACTGCA GTCGACCTGC
ATAACAACTT GTCAAGAGCC GGCTCTTGGC CCATATCTCT AGCTCAGGAA GCTTCCTCTC
TCTTCTCAGA TCACATTCTC TACCATTTAT CACAATGTTA CTCTCAACTC CAGCCTTCCT
TTCATTTGCC CTCCTTCTCG TCTCCCAGTC CTCCGCCCAG GGACACACTG CTCCTCCTGG
CCGACACCGT CACCCTAGGA TCTTCAAAGA CCTTCAAGAG CGTGGCCAAC TGGATGAGCG
GTTGCTCCCT ATCACCGCTA CCACCACTGT TGTGGTCCCC ATGACCGCCA CCAGGACTAT
CTGGGTTGAT TCCACTCAGT TAGTCCTTGG TGACGGTGGT AATGATGGAG ACAATGATGC
TTCAGGCGAT GTTAGCAGTG TTTGGTCTTC GCAGGCGAGC CAGAGCACTG AAGGAGCATC
CACAAGCAGT GAAGCTATGT TACCTACCGC CTCAGCATCA TCATCAGTTT CAGACTTGAC
ATCATCTTCC TACGACACCG ACGCCCAGTC ATCATCCTTT GTCACCGGCT CTTACATCGA
AGATGTCACG GCGACGTCTA GTCTTCTTTC CGATTCCCTT CCTACTTCCT CCTCCATCTC
CTCCGATTAT CCTTCCCTTT CTGTTTCCCA ATCTGAAGCC TCTTCTTCCA CCACTGGTGT
CGCCACATCC TCAGCCACTG TGACCGACTC CAGCTTTTCT ACCTTTGCTG AAGAGCCAGC
CTCAACTGGA TCTTCATCGT CTCAGTCAAT TGCTGCCGAT TCTGCTCCTA GCTCTTCCGC
TTCGACATCG GCTTCAACAG GATCGAGCTC TTCTCGGCCT ACATCGCTGC CCCAAACCGA
GTCAGCGACC AAGTCTGAGG ATTTGGGCGC CGCGTCGACT AACATTGCCA GCAATGCCAC
CGTGTCTGAC AATGTGAGTG TGTCGGAAAG TCAGTGGGCG TCAGTAACCT CGACCAAGAG
CTCTTCTATC TCCGAAACCG GATCAGCAAG CTTGTCTGGG AGTGAGTCTG TATCCCTCTC
CGACTCATTC TCTATCTCTG CGACATCTAC AGATTCTGCG GCGGTTATAG GAACGGCTAG
CTCTTCTTAC TCTAGATTCG AGTCATCAGC CACTGCTTCT GAGACTGCCT CAGCTTCGGC
CAATGAGACA GGTTCCAAGA CCAAGTCGCA CGGGAACTGG TGGGAGACTA GCACCTCTTC
TTCCGCCTGG GCTTCTTCCT CTTTGAGCGC ATCTGAAAGC GCCTCAGAGA GCGCTTCTTT
GACAGCGTCG GGTACGGTCT CTGTTTCTGA CTCTTCAACA TGGCCTGAGA GCGCTTCAGT
CTCCTCTGCT GCCACAGCTA CAACCTTTGA ATCATCTACT TCCATTTCCG CCACCTCTAC
CTCTACCTCT AGCTCTTCTT CGCCTACCTC TACTCTTGCC TCTACTCTCA TGTTGGGATA
TTATCCTGAT TGGTCCGCCT ACTACCTTTC TCCAGAGTCT GTCGACTGGG ACCGCTTCGA
CATCCTTGAC TTTGCTTTCG CCATCCCCAA CTCTGACGGA TCCCTCTACT TCACCGATGA
TAGCTCTACA GACTCCCTTC AGCGATTGGT CACTACTGGT CACGCTGCGG GTAAGCGAGT
CAAATTGTCG ATCGGTGGCT GGACTGGGTC TGCGTACTTC TCTACCATTG TGGCCGATGA
TTCTCTCCGA GCTACCTTTG TAAGCAATAT CTATGACATC TACAACCAAT ACAACCTCGA
TGGTATCGAT ATTGATTGGG AGTACCCTGG TACTGCCGGT GCCGATGGTA ACGCCGTGTC
ATCTGATGAC TCTGCCAACT TCCTCATTTT CCTTCAAGAC TTGAGGGCCG CTTTGCCAAG
CGAGGCCATC ATCACCTCTG CAACGCAAGT CTGGCCATTT GCGGACAGCA ATGGTAACCC
GATGACCGAT GTGAGCGAGT TTGCCAAGGT CCTTGACTGG ATTTTGATCA TGAACTACGA
TGTCTGGGGT TGTAAGTATC ACCATAGCTT GTACGCGAAT CAATATTGAT GCCATCCGCA
GCTTCCAGCA CCCCTGGTCC CAATGCTCCT CTCTCTGATG GTTGCGGTAA CTCTACTCAG
CCTCTCGCCA ACGCTTATGC TGCAGTTTCC TCATGGACCA GTGCTGGCAT GCCCGCAAAC
CAGATCACCC TCGGTGTCCC TGCGTAAGTG TTACTGGTGT TTTACTGACA AGGTGCTGAT
CAACTTTTAC AGCTATGGTT ATATCCAAGT CTCTTCGGCT TCTTCCCTTA TTCAGCGACG
CTCTCTCCCT CTTCTCCCTC ACAAACGATC TAAGCACGCC AAGAAGGCCA GCTACGTCAC
AGTTCAGAAC GAGTCTGGAG GTACGACCGA CGGTCAAGTC ATGTGGTATG GTCTCCTAAA
CCAAGGCGCT TTGACCTTGA GCGATGGAGA GTACGTCGCT ACCGGTGGTT TCACCAGACA
TTGGGATGAC TGTTCTAGTA CTGTAAGTCC TCGGCCACTC TACTGCATGA TGGATTCTCA
TTGACTCGTC GTAAATTAGC CTTGGCTCAA GTCTTCTGAA TCCGGCCAAA TCGTCACCTA
CGATGACCCC CAATCTATGA ACCTCAAGGC TCAGTTCGCT GCTCAGGCTG GGTTGAGGGG
ATGTAATGTC TTCTCTGTCG ATGGTGACTG GACGGGCTCG TCCTGGCCTT TGACAGATGC
TGTCAGGAGT GGTTTGGGAC TTCCCGCTGT GTAATAAGAG AAGATATGGA ATGTTGTAGG
AAAAAAAAAG AGCGTGGATC TAAACAGGAT ATTTCTGACC TTGATGGTCT AGAGAACAGT
ATATAATTGC CAAATTGATG CATTGCACCA CATACTATAA T
|
|---|
| Protein sequence | MLLSTPAFLS FALLLVSQSS AQGHTAPPGR HRHPRIFKDL QERGQLDERL LPITATTTVV
VPMTATRTIW VDSTQLVLGD GGNDGDNDAS GDVSSVWSSQ ASQSTEGAST SSEAMLPTAS
ASSSVSDLTS SSYDTDAQSS SFVTGSYIED VTATSSLLSD SLPTSSSISS DYPSLSVSQS
EASSSTTGVA TSSATVTDSS FSTFAEEPAS TGSSSSQSIA ADSAPSSSAS TSASTGSSSS
RPTSLPQTES ATKSEDLGAA STNIASNATV SDNVSVSESQ WASVTSTKSS SISETGSASL
SGSESVSLSD SFSISATSTD SAAVIGTASS SYSRFESSAT ASETASASAN ETGSKTKSHG
NWWETSTSSS AWASSSLSAS ESASESASLT ASGTVSVSDS STWPESASVS SAATATTFES
STSISATSTS TSSSSSPTST LASTLMLGYY PDWSAYYLSP ESVDWDRFDI LDFAFAIPNS
DGSLYFTDDS STDSLQRLVT TGHAAGKRVK LSIGGWTGSA YFSTIVADDS LRATFVSNIY
DIYNQYNLDG IDIDWEYPGT AGADGNAVSS DDSANFLIFL QDLRAALPSE AIITSATQVW
PFADSNGNPM TDVSEFAKVL DWILIMNYDV WGSSSTPGPN APLSDGCGNS TQPLANAYAA
VSSWTSAGMP ANQITLGVPA YGYIQVSSAS SLIQRRSLPL LPHKRSKHAK KASYVTVQNE
SGGTTDGQVM WYGLLNQGAL TLSDGEYVAT GGFTRHWDDC SSTPWLKSSE SGQIVTYDDP
QSMNLKAQFA AQAGLRGCNV FSVDGDWTGS SWPLTDAVRS GLGLPAV
|
|---|
| |