Gene CNI03280 details

Gene Information

• Locus tag: CNI03280
• ID: 3259804
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006694
• Strand: +
• Start bp: 887885
• End bp: 891399
• Gene Length: 3515 bp
• Protein Length: 881 aa
• GC content: 48%
• IMG OID: 638258820
• Product: topoisomerase I
• Protein accession: XP_572925
• Protein GI: 58271538
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3569] Topoisomerase IB

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAATCCCTTT GTACACAGTC CCAGCCCACA GTTATTCCTG TACTTTTCAG ACCAACCAGC 
GCCCTTCTAC TCTCCTCAAA CGCGTACATT CGCTCGCTAT GTCCTTCCCG CCAGTGCAGC 
CCGCCGACAA TGGCATGGCG GTCGTTGCTC CCAATCTCGA GTCTAACCCT ACCACTGTTG 
CGTCCCACGC CCCACAAATT GCCGTCAAGG ATGAAAATGA TAGTATGAGC GAGGATGAGC 
AGCCTTTGGC GAAAAGCAAA GCGAATGGAG CGAGGAAGAG AGTCGAAAAC AGCAGTGACG 
AGGAAGAGAA ACCTCTCGTG AGTTTGTCGT AACCTGGTTT TTACGCTTCA GGTGTCGAAA 
ACCAATGTGT CATGTGCGTA AAAGACGTTA TTCGAGACCC ACCGGACTTG TGATGATATC 
ATCCCATGTC GGTCAACGTT TTGGTGTATC ACTCAACTAT GGCGCTATGG CGGCGGCGAG 
CAGCTACCCA GAAGAAGGGG TTGTCTATGA TGTGTCCTAT GCTTATGGAC ATTGTACTGA 
CGAATATTGT AGAGCAAAAA GCCCAGAGCC AATGGTGTCA ACAAGAAAAG GGTCGTCGCC 
AGCAGTGATG AAGAAAGCGA TGTTTCACCT CCTGCTAAGG TGAGACGCGT TTCGACCCAC 
GCATTTCCGA CCAGAATGTT GCTGACGCGC CGTTTCGACA TCCAGAGGCC TGTTTCCAAG 
CAATCCAAAC CTGCCACCCC CGATTCTGAA TCTGATGACG ATCAACCTCT CGCCAAGAAG 
GCTAACGGAC TGGCCGCATC CAAACGTCAG GCTAAAAAAG CGGAGGAATT ATCAGAAGAA 
AGCTCGGAGG AAGAAAAGCC TCTTGCGAAG GTTGCCAAGA GGGTATCAGC AAAGAAGATG 
AAGAGCGAGA CTGAGGACTC TGAGGAAGAC CGGCCTCTTG CAAAGAAGAA GGCTCCTGTT 
AAGCGTGCTC CAGCAAAGAA ATCGGCGAAG AAGGAACCTA GTGAGAGTGA AGAGGATGAG 
AAGCCTTTAG CGAAGAACGC TAGAGGGAAG GCCAAGGCGG CGACGGTGAA GGAAGAGAAA 
GGTAAGAAGA CAAAGAAGGA GAAAGAGTGG GTATATTCAT TATGCTTCAT CGGAATGTTC 
TAACGTTATG CATAGAGAGG AAGAAGAGGA GGAAAGGTAC AAGTGGTGGG AACAGGATGC 
TTTGGGTGAT GGGTCATCCA AGTGGACGGT CCTTGAGCAC AACGCTGTTC TCTTCCCTCC 
TCCTTATGTT CCTTTACCCA AGAACGTGAA AATGAAGTAC GATGGTAAGT CTTTTGCCTA 
CTCTGATTTA TCCTATGACT AAAACCCAAA CGCAGGCGTC TCACTTACCC TCCCTCCCGA 
GTCTGAAGAA GTCGCCGGTT TCTTCGGTGC CCTCCTTGAA ACCGACTATG CTCAAGATGC 
CAAATTCCGT GAAAACTTTT TCCGAGACTT TAAGGCTATC GTCGAAAAAT ATCCACCCAA 
GGAGGACGTC AAGGTTAAGA AGTTGGAAAA GTGCGATTTT AGACCGATGT TTGAGTACTT 
TGAAAAGGAG AAGGAGAAGA AGAAGGCGTT GACTAAGGAA GAGAAAAAGG CGTAAGTCTG 
ACGTTCTAGA TTGGACAGAA TGAGACTGAC GATAAAAGGT CAGGATTAAA GCGGAGAAGG 
ACAAGCTTGA AGCACCGTAT CTCTATGCGA ATGTTGATGG AAGGAAGGAA AAGGTCGGCA 
ACTTCCGTGC AGAACCTCCT GGATTGTTCA AGGGTCGTGG TGAACATCCC AAGAAGGGTA 
CTGTCAAGGT GAGTTCAATA GTTTTTATCG CTGGTCTTTC GCTGTTTCCT GACGTTTCTG 
TCCATAGAAC CGTCTCCGAC CTGAAGATAT CATTATCAAC ATTGGCAAAG AAGCTCCTAT 
CCCTGTGCCC AACATTCCCG GTCAGTGGAA GGGTATCCAG CATGATAACA CAGTGACTTG 
GCTCGCTCAT TGGAAGGAGA ATGTCAACGG TAACGCCAAA TACGTCTTCT TGAGCGCTGG 
TAGTGCGTGG AAAGGTCAAA GTGATCGTGC CAAGTTTGAA AAGGCCCGTG AGCTTATCGT 
GGGTCATTAT TTCTCGCTCC TTTTTTTCAG GCTACTAATG TTGATTTTAG AAACATGTCG 
ACAAAATTCG AAAAGACTAC ACTGCCGACC TCAAATCCAA AGTCATGGCT GACCGACAAC 
GTGCCACCGC CCTGTACTTT ATCGATCGTC TGGCTCTGCG AGCGGGTAAT GAAAAGGGTG 
AAGATGAAGC GGATACTGTC GGCTGTTGTT CTCTGCGATA CGAACACGTG ACGCTCTCTC 
CACCGAATAC TATCATCTTT GATTTCCTCG GTAAGGACTC GATGAGGTTC CATCAGGAAG 
TCGAGGTCGA TCCGCAAGTG TTCAAGAACA TAAAACTGTT TAAGGCTGAT CCGAAGAAGA 
AGGGTGACGA TATCTTTGAC CGACTGACCG TAAGTATATT GTTAATCAAT GGGATGCCGC 
GCAGAGCTGA CGATCGTTTA AGACCACTCT TCTTAACAAG CACCTCAACA GCATGATGCC 
TGGTCTTACC GCCAAGGTTT TCCGTACCTA CAACGCCTCA TGGACTTTCC AAGAACAACT 
CAAAAACACA CCTAAGAACG GAACTGTAGC CGAGAAGATT GCGGCGTACA ACACTGCCAA 
TAGGGATGTT GCCATCTTGT GTAATCACCA AAAGAGTGTC AGCAAGGGTT TTGAGGGCAG 
TTTTGCCAAA GCCGAGGATA AGATTCGTGC CCTCAAGTAT CAGCGTCTCA AGCTTCGTCT 
CCAACTTTTT TCTCTTAACC CCAAGATTAA GAAGAAGCAT CCCGAGCTTG CGGAGGATGA 
GTCTGATGTG GATGACGAAT TTATGGAGCG CCACGAAGCC GAATTACTCG AAAAAGCTTT 
GGAGAACGCA AAGAAGAAAT GGGATACGGA TAATGTCAAG CTTGAAGGGG ATGGGAAGAA 
AAAGAAGACG AAGGGAGAGT TGGATGAGAG GTTGAGTGAG ATCAAGGCAG AGTTTAAGGA 
GTTGAAGAAG GAGAGGAAGG CTAAAAAGAT TGATGCCAAG AGAGGAGGTA AGCATTTTCT 
TTGATCATGC TGTTGAAAAT GCTGATAAAA GTGAACAGCC ACGGAGGAGA AACTTCTTGC 
TCAGGTCGCC AGGATCGACG AACGTATCGC TACCGCCAAA GTCCAGCTTC AAGATCGAGA 
CAAGCTCAAG GATGTTGCTT TGGGCACATC CAAGATTAAC TATATCGATC CAAGACTAAC 
TGTCGCGTGG GCGAAGAAGT TTGATGTTCC TCTCGAAAAA CTGTTCTCCA AAACCCTGCG 
AGAAAAGTTC CCTTGGGCTG AGGCGGAGGC TGGACCGGAC TGGGTTTTCT AGATGGGGTG 
CACGTGCTGG GGATCCGGGG ATCCGGTGTG GGAGTGGGAG TGGTATCGCA TACTTTCATA 
TAGGCTTTTA CACAAAACAA TGGTCTTCTC GGTTT 

 

Protein sequence

MSFPPVQPAD NGMAVVAPNL ESNPTTVASH APQIAVKDEN DSMSEDEQPL AKSKANGARK 
RVENSSDEEE KPLSKKPRAN GVNKKRVVAS SDEESDVSPP AKRPVSKQSK PATPDSESDD 
DQPLAKKANG LAASKRQAKK AEELSEESSE EEKPLAKVAK RVSAKKMKSE TEDSEEDRPL 
AKKKAPVKRA PAKKSAKKEP SESEEDEKPL AKNARGKAKA ATVKEEKGKK TKKEKEEEEE 
EERYKWWEQD ALGDGSSKWT VLEHNAVLFP PPYVPLPKNV KMKYDGVSLT LPPESEEVAG 
FFGALLETDY AQDAKFRENF FRDFKAIVEK YPPKEDVKVK KLEKCDFRPM FEYFEKEKEK 
KKALTKEEKK AIKAEKDKLE APYLYANVDG RKEKVGNFRA EPPGLFKGRG EHPKKGTVKN 
RLRPEDIIIN IGKEAPIPVP NIPGQWKGIQ HDNTVTWLAH WKENVNGNAK YVFLSAGSAW 
KGQSDRAKFE KARELIKHVD KIRKDYTADL KSKVMADRQR ATALYFIDRL ALRAGNEKGE 
DEADTVGCCS LRYEHVTLSP PNTIIFDFLG KDSMRFHQEV EVDPQVFKNI KLFKADPKKK 
GDDIFDRLTT TLLNKHLNSM MPGLTAKVFR TYNASWTFQE QLKNTPKNGT VAEKIAAYNT 
ANRDVAILCN HQKSVSKGFE GSFAKAEDKI RALKYQRLKL RLQLFSLNPK IKKKHPELAE 
DESDVDDEFM ERHEAELLEK ALENAKKKWD TDNVKLEGDG KKKKTKGELD ERLSEIKAEF 
KELKKERKAK KIDAKRGATE EKLLAQVARI DERIATAKVQ LQDRDKLKDV ALGTSKINYI 
DPRLTVAWAK KFDVPLEKLF SKTLREKFPW AEAEAGPDWV F