Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CNI02410 |
Symbol | |
ID | 3259805 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006694 |
Strand | - |
Start bp | 662891 |
End bp | 664534 |
Gene Length | 1644 bp |
Protein Length | 328 aa |
Translation table | |
GC content | 45% |
IMG OID | 638258731 |
Product | Short chain 3-hydroxyacyl-CoA dehydrogenase, putative |
Protein accession | XP_572875 |
Protein GI | 58271438 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00642638 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCACAC CTGTGCTCCG AAGTGCAATG TCTTCTCAGC GCGCAGCTAC CTACAGACTC TCAACCGTCC AGCGGCATCT CTCCACCACT TCAGCTACTC GCAAAGTTGA GGAGCTCACG GTCTTTGGTG CCGGGCTTAT GGGTGCTGGA ATTGCCCAAG TTGGAGCCCA GAATGGTCTT AAAGTGGGTA TTCGAGCCTG CTTCAGAGCT ATTCGTGGTT GACCTGTGGT TGTAGGTGGT ACTTGCAGAT GTAACGGACA AGGCCCTTGA GTGGGTTCAC CCTTGCAAAT GTTGGTAGAA TTAACTGATG ACCCAGCTAT ATTAAGAAAT GGTATCAATA TTATCTCTAA ATCCCTGGCA AGAGTGGCCA AGAAGAAATC CCCAGACGAT ATAGAAGGCT TTACCAACAA TGTCTTAAAG AATATCTCTA CTACAACCGA CTCGTGAGTA CATGGTCTCG AATTGATAAA CTGACGAATT GCTCTACAAA GGTCTCAAGC TGTTGAGAAC GCTGACCTGG TAGTTGAGGC TATTATAGAA TCTATCAAAG TCAAGAGGGA CCTCTTTGGC TTCTTGGACG GAAAGGCCAA GTGAGTGGCT GATTCGATTA CGAGTCTGTT CATAAGACTA ACGAATGTAG ATCTGACTGT ATCTTTGCTA CCAACACTTC TTCATTGTCT GTAACAGAAA TCGCGGAAGC GTGTAGCCCA GAGCGTCAAG CCAAGTCAGT GGAAGGCTCC TGAGACTTTA TTGTTTGTTT GCTGATCAGA TTTCAGGTTC GCTGGATTGC ATTTCTTTAA TCCCGTCCCT GGTAAGTCTT ATGGGCTCAC AATAATGAGT AGCATTAATA GCTTGATCAG CTATGAAGCT CGTTGAAATC ATTCGAACAC CCCAGACCTC GCAGGAGACA TATGAAACTC TTCGAGAAGT GACCCTTCAG ATGGGCAAGT CACCAGTCAC GTGCAATGAT ACTCCAGGCT TCATCGTGAA TCGTCTTCTC GTTCCTTACC TTTGTATGTC AACATATTCA ACCTGTACTT GCCCGAGAGC TAATGAAATA ATTTGTAGTG GAGGCCATTC GAATGATTGA GCGAGGTGAT GCTACTGCGG AGGATATCGA CACCGCTATG GAACTGGGTG CTGGATACCG TGAGTTTAAC AAGTCAATTT GGACGCTGTC CATGAACTAC TACTGTAGCT AACGAATGAT TGGCCATAGC CATGGGAGTG AGCGTATCGT CTTATATTGT ACCTTACCTT GACACTAATT GGTTTCTTTC AAGCCATTCA AGTTGCTCGA CTTTGTCGGA CTCGGTAAGT CTTCAAACTC TTCTGTCCAT TCTTAGGCTA ATGATGAACA TGCTTCATAG ATACCACCTC GTATATTGCC GAAGGATGGC GAGAGAAGGC GGCGTCTGGT GCGATCTCCA AGGAGTTGGT TTCGCCCATT CCTCTTTTGG ACAAGCTTGT CAAGGAGGGC AAGCTGGGCA GGAAGAGTGG TCATGGATTT TACAAAGTAA GGTTTGACAG GTAAGATTCG ACCTCTCAGC TAATGATCAT GACAGTATGA GGGTAAGAAG TAAAACACAA ATTGTTGCGA ATACGCTTCG AAAATCGAAT GTATCGAATG TCTACATGAG TAAT
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Protein sequence | MITPVLRSAM SSQRAATYRL STVQRHLSTT SATRKVEELT VFGAGLMGAG IAQVGAQNGL KVELTDDPAI LRNGINIISK SLARVAKKKS PDDIEGFTNN VLKNISTTTD SSQAVENADL VVEAIIESIK VKRDLFGFLD GKAKSDCIFA TNTSSLSVTE IAEACSPERQ AKFAGLHFFN PVPAMKLVEI IRTPQTSQET YETLREVTLQ MGKSPVTCND TPGFIVNRLL VPYLLEAIRM IERGDATAED IDTAMELGAG YPMGPFKLLD FVGLDTTSYI AEGWREKAAS GAISKELVSP IPLLDKLVKE GKLGRKSGHG FYKYEGKK
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