| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNI02250 |
|---|
| Symbol | |
|---|
| ID | 3259750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006694 |
|---|
| Strand | - |
|---|
| Start bp | 622419 |
|---|
| End bp | 625515 |
|---|
| Gene Length | 3097 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | 638258714 |
|---|
| Product | protein-vacuolar targeting-related protein, putative |
|---|
| Protein accession | XP_572708 |
|---|
| Protein GI | 58271104 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2270] Permeases of the major facilitator superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.470976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGCTTAGTTA TACGAAAGAT CGGAAATTGC ATTATACATT AGAACACAAT CGAGCAAAGA
AAACCTGTAC GAGTACTTGA GCAAGTCTTA TCATCACATG CGCTATATAT CATCTTTATT
CGTGGAACAC ATCATCTCCC ATCATGGACG GTTCGAATGC GTCAGACAGG CTCACTACTC
AAGAAATGGA GGAAGGCCAT CTTCAACCGG TACAAGATGA CTCTGCCCTT ACCGATGAGG
CAACACTCTT TGCCAGCCCT TTACCTATCG TCGGCGAAAG AAAAACAACA ACAAGAAAGG
AGGTCTGGGT GAGTTACTAC CACCACCGAA CAAATAATCA TGTTACCGCC GTTTGAGTGA
ACGACACACG GCCAACGCTG ACTGTTCGGT TCGTCATTCG TCATGCCATC ACGACGATTT
GCGACTTCCG GCGGTAGTCT TGGTACATTT ACTACGTCGG CAACTCCGGA CTAGGTTGGT
TACCTGATAA TTGCTGACCC TTTTTTGCAC ATATTGTACT GATTGTTGAA TCTATAGGTC
CATTCAATTT TGCCATATCG GCATGGCAAA ATCTGTTATA TTTGGCAGGA TGGGATCCTG
CCTACCCAAC GGGTACTGTC CCATGCGGTG ATGGGGCATG CAATCTCATT GCTTTTGGGT
CAGAGCGGTC TGGTATGTTC TGAGTTTGGG ATATGTGCTT ATGTGCAGTC AACTCCATTG
TTCTGATCAC AAACGGCCTT TCTTTCGCTT TCCAAGCGGT TCTTTTCCTC ATAATGGGAT
CGTTCGCGGA CTACGGTATC ATCCGACCTC ACATTACGAC CGCATTTACT GTGTTAGCAT
GGGCTGTTAG TTTTGCATGG CTGGGGGTGG AAGATCCCTC CAAGTAAGTG ATTTACTCGG
CTTATCTTTC TATCTGTTCG TGAGAGGGAT GCTACTGACC AGTCTATATT TCTTATAGAT
GGCAGGCTGG AACAGCTTTG TATATCTTAG GTCTCATCGG TTATCAAGGC GCCTTGACTT
TCTGGACAGC GGCATTCCCA GGCCTTGCTC GAGATTTACC GGAAATAAAA GATAGTGAAG
AAAAACTTGC TCGAGGAGAC ACCGAGTAAG TCACAAGACT GTTTTTGGCA ATGGTTTAGT
TATGATAATT ATTAACTATC ATCATAGCCG GAAGTCCCAC GATAGGCTTG ACATGCTGGC
ACGGAATCGC CTCGCCAATG TCTCTTTCCT TGTCTGCTCA TTAGGGGAAC TAGTTGTACT
CGCTATCTTG GCTGGGATTT TGGAAGGGGT GATCAACGAT GACGCCGATA GCAACACCAA
AGCTTTGAGT ATTGTTTGCG CCTACAGTGC TGGTGTTTGG AGTGAGTCCC TTCTGTTCAT
CGCTTGGCCT TGGCTAACAA GGAACTAACA GTCATATGCG CCACCCCATG GCTGCTGTTC
GAGCAATACC GCCCGGGGCA TCAGCTTCCT CCTCACACGA CATATTTTAC CGTTGGGTAA
GTCAACTATT AAAAGGTATA GATTCTACGA TGACCCCCTG ACACTGCTAT GAAGGATCAA
ACAGATCTAC CACGCCTTTC GTTTATGCTT GCGTCTAAAA CAAACATTTA TCTATCTCGT
ACGTTGGAAA AGTGTCATAG CACTAGATAA GGTTCCAGCA TCACTTTTAC TCACGGTCCC
TTCCAGGCGG CCTATTTTTT CTTGGGCGAT TGCCTCAATA CTCTCGGTAC GTTTTTGTTT
CCTCCCTGGT TTCTGAAGAG ACGAAAAGAA CTAAGTTGAT CGGTCCCGCC ATTATAGTCA
CAGGTGAGTA TTTTAAGAGA GCTTGTCTTA ACGCTCTAGC TTACCTCTCC CACTTAAACT
TACAGTCATT GCGACATTGC AAAACGAAGT CGTGTCCTAT GATACCAAGA TGCTCAATTA
GTACGGTCAC ATTGGCGTTC AACAAACCAG TCGGTTCAGC TAATCGTGAG AGCGTAGTCT
TCTCATTGAT GGCATCGCAG CTCAAGCTCT GGGGTGCGCC TTTTCTAGAT CCGTTTCCTT
TCTCTTGCTA ATAACAGTGC TTTGCCAGTA TCGGACTCTT CTGGGCCGTG CAGAAACGCT
ACACAATACC CACGAAAACG ATGCTCTTGT TTGTAAGTTA TACCTCTCCA ACAGTGACCT
ATCACTAACT GATTTATTCA TTCAGAATGC CTTCTGGATC CTTCTATTGG CTGCCTGGGG
ATGCGTTGGC ATAACACAAA CTAGATTTGG CTTCCATAAT GCATGGGAAT TCTGGGCTTA
CCAAGCTTTC TATGGAGTAA GTGGAAGTCG AAACGAAAGG ATGAAGCTAA TCTATACTGT
ATAAAGATCG CCGTTTGCCC TTGGTACGCA ATTTCCGTGA GTTTGTTACA TTTTGCACTA
CAAGTGTCGA TGCTGATCAT CATCTAGCAA GCTATGATCT CTGAGGTCAT ACCACGAGGA
AAAGAGGTAA GAAGAGCGGG GAAGACTATG GTTCATTGAT CAAGGGATGC GGCTAACAGG
TTATAATAGT TCTTGTTCTT CGCTCTTTTT TCCATCATCG GCAAAACCTC AAGTTTCATT
GGGCCTTTTG TATCAAGTGC TATCATTGAC GACAGCGGCA ACACCAATAT GCCTTTTACA
TTCCTGCTAG GTTTAGGAGT GGTCTCAGTG GGGATCCTTG CCTGTGTTGA CGTGGAAAAA
TCTCGAAAAG AATGTAGGAA ATACCTTGAA GACGAGGCAA TCCGAGTGTA CGGAATGGAT
TTGGCAGACG TGGTTGTGAT TAGTGGTCAA AGCATAGAAA TGAATAAGGC AGGAAGAACC
GGAGCAAGCG TTGAGGAAAC TGAAAAAGGG GATCTCATTG CATAGAAAGC TTGATATGCT
TATTTTGTAG CCAGTTTGGC GGATTAAAAG TGGGGATCCT ACCATACTTC TTTCCTGTTG
TTAAGGACCA CGTAGGAGGT AGGTAGTCTA ATTAGATAAG ACCGATAGTT ATAGCAGAAT
AGAGGTATAC ACGTCCAATA CATATGATTG AGAAGAACTG ATTCTCAAGG GATCTCCGAA
AGTATATGGG GAGACCTATG TACAATCAAT GCAATCA
|
|---|
| Protein sequence | MDGSNASDRL TTQEMEEGHL QPVQDDSALT DEATLFASPL PIVGERKTTT RKEVWSWYIY
YVGNSGLGPF NFAISAWQNL LYLAGWDPAY PTGTVPCGDG ACNLIAFGSE RSVNSIVLIT
NGLSFAFQAV LFLIMGSFAD YGIIRPHITT AFTVLAWAVS FAWLGVEDPS KWQAGTALYI
LGLIGYQGAL TFWTAAFPGL ARDLPEIKDS EEKLARGDTD RKSHDRLDML ARNRLANVSF
LVCSLGELVV LAILAGILEG VINDDADSNT KALSIVCAYS AGVWTSLLLT VPSRRPIFSW
AIASILSVLI ATLQNEVVSY DTKMLNYLLI DGIAAQALGI GLFWAVQKRY TIPTKTMLLF
NAFWILLLAA WGCVGITQTR FGFHNAWEFW AYQAFYGIAV CPWYAISQAM ISEVIPRGKE
FLFFALFSII GKTSSFIGPF VSSAIIDDSG NTNMPFTFLL GLGVVSVGIL ACVDVEKSRK
ECRKYLEDEA IRVYGMDLAD VVVISGQSIE MNKAGRTGAS VEETEKGDLI A
|
|---|
| |