| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNH02560 |
|---|
| Symbol | |
|---|
| ID | 3259003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006693 |
|---|
| Strand | - |
|---|
| Start bp | 401330 |
|---|
| End bp | 403292 |
|---|
| Gene Length | 1963 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | 638258228 |
|---|
| Product | syntaxin, putative |
|---|
| Protein accession | XP_572432 |
|---|
| Protein GI | 58270552 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5074] t-SNARE complex subunit, syntaxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CACCAGCGCA CGGGCCCACA GGCCTACGAC CACAGGCCAC CAGCCGTCTA TCAGCTTCTG
GGCACCAGCA AACATTCACT ATTCCATCCT TTTTCTCCTC CTTTCTCCGC CTTTCTCCGT
CTCCTTATAC ACCTTGCAGC CTCCACCTCT GTGTAACGCC CCGAGATCAG GACACCCCGC
CCAGCAACCC GCCCCTTGCC CTTCTTCCGC ACTAGCCTCC CAGGTACGAC GAAACCACGC
ACAGCCGCGT CTCGTCCTAT TTTCTTGCAT CTCCTCTCGA TACCACTTTT TCTTCTTTTC
TGCTCCAAAC AATAATACAA AATGGCTCGA GACAGGCTTG GAAACGTTGT AAGTCCAGCA
TCGCACACCC TATGGACACG TATCCTGATA CTTTTCATTA GAACCGACAA TACGGGTCCG
TGTGCCCTTC TCAACATCTC ATGCTCAGAC ACTGACCCAT CTACTGAATT TATCTAGTGA
ACAACCCACT CCAGGGCCGA CTTACCCGCC GCCCGGTAAC GGCGTTGTCG CTCCCACTCG
AACTGCCAAC CCGTACGCTC AGCAGACCTC TGTCGCTGCC GCTGCCCCTG GTGGGTACGG
CGCTCAGGGC GGCTACGGTG CGAGCGCTGG TAACCCGTAT GCCCAAACCG GTCAAGCTGG
AAGTCCCTAC GCTACAGGAG GGCAGTATGG ACAACAAGAA CAATACGCAA TGGGGGGGGC
TAATGGTGGT GCGGGCGGGG ATTTCTGGAC TGAATTAAGC AACACGAACT CTCTTTTGGG
TCAGTTGCAG GAGCAGATTC AGGCTGTCAG AACAGCCCAT CAAACCAGTT TGGTGAGTGT
CATTTAGCAA ATGAAAGCCC TCAATACTTA CAGAGTGCGC ATTGATAGAC CTCAACGGAC
CCCCAGGCCG CCGCATATGC CGCTCAACTC AACGACCAAG CTCGTGTGCA ACGGGAAGAG
TGCAAAAACG AAATCAAAAC CCTTTACAAG CTCGCCAAGG GCGACCGCGC CCAAAGGACT
CAGGCTGAGG GTGTCAAGTC TCGTTTCCAA GGCCTGTTGC AGGAACATCA GGTAATTGAG
AAGGAGTTTA GGAAGAAGGT CAAGGACAGA GTCGAAAGAC AGTACAAGAT TGTAAACCCC
AACGCGACTG AAGAAGAAAT CAAGGAGGTT ACCGAGAGTG ATAATCCTCA GGTCTTCTCA
CAAGCTGTAA GTTTAAACAG CTGACACAAG ATCTCAATGA AGGCTGATCA CAAATAGTTG
TTAAACTCTA ACCGATATGG TGCTGCTCGA GGCGCATACA GGGAGGTTCA AGAGCGACAT
GCCGAGATTC AGAAGATTGA AAAGACTCTT ACGGAGCTCG CCCAGATGTT CCAAGAAATG
GCCATGCTTG TTGAACAACA GGATGAGACA ATTGTTAATG TGGAGACCCA AGCACACGGC
GTGGATACAG ACATCAAAGC AGGGTAAGTT TAATGTGATG TTCTTGCTTG TACGTCAGGG
CTCATAGGTA TTTAGGTTGG TGCAGACGGA CAAGGCGGTA GAAAGCGCAA GACGCGCTAG
GAGAAAGAAG TGGATCTGTT TCTGGATCGT CGGTAAGCCG ACATCGTCCC TGCCGCAAGC
CGTGCACTAG GCTGACCATG TGTCTTAGTC CTTATCATTG TCATTCTCGC TGTCATTCTG
GGTGCCTACT TTGGTACCAA GGGCAAGTAA ACAGTTTGCG AGCTTTACGT CCCCATCCTT
TTTACCTTAG ACATATTTGT TTGTTGTGAA TTTGTGTCCG CGTATTTTGG CGGACGACCG
TTACGATTTT ATTCAGAATG TTTCTGTTTC TGTTTCTTTT TTGCCCTGGC GATTCCTTTT
TTACTGCCCT AATCCATGTC TCTGTACCGG CAGATGGACG CGGTGGGAGT GATTAATGCA
CCTAGTAAAG AGATGGATGC TATGAATCTA TGCTACTTAG TTA
|
|---|
| Protein sequence | MARDRLGNVN RQYGEQPTPG PTYPPPGNGV VAPTRTANPY AQQTSVAAAA PGGYGAQGGY
GASAGNPYAQ TGQAGSPYAT GGQYGQQEQY AMGGANGGAG GDFWTELSNT NSLLGQLQEQ
IQAVRTAHQT SLTSTDPQAA AYAAQLNDQA RVQREECKNE IKTLYKLAKG DRAQRTQAEG
VKSRFQGLLQ EHQVIEKEFR KKVKDRVERQ YKIVNPNATE EEIKEVTESD NPQVFSQALL
NSNRYGAARG AYREVQERHA EIQKIEKTLT ELAQMFQEMA MLVEQQDETI VNVETQAHGV
DTDIKAGLVQ TDKAVESARR ARRKKWICFW IVVLIIVILA VILGAYFGTK GK
|
|---|
| |