| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNH02090 |
|---|
| Symbol | |
|---|
| ID | 3259194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006693 |
|---|
| Strand | + |
|---|
| Start bp | 539839 |
|---|
| End bp | 541453 |
|---|
| Gene Length | 1615 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 638258278 |
|---|
| Product | retinal short-chain dehydrogenase/reductase, putative |
|---|
| Protein accession | XP_572383 |
|---|
| Protein GI | 58270454 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.207566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CAACAAAATT CCTGTGGAAA TCGTGTGGAG AAGACAAGGG AGAAGAGACG GTCACTTACA
CGACCGCCAT CGCCATGGCA CTCACCCTTG ACATCGGTGA GTCTATTAGC CCAGCCTAGC
ATACAGCATG CCCAGGTCTC TCGTCAATAC TTATCGTCCC CCTTTTGTTT AGTTGTATGT
TGCCTACGTA AAACCATTTT CTCTCCCTAT CTTGCCATCT CCATTCCAGT AGTTCTCCAT
CTCCATTCAA TCTCAAGCCG TTTAGTACTC ATTGTATCCT ATTTCTGGGG AGTGGTTATT
TGTTTCATTC GTGAGTCCAT TCATCTTTCT ATGACGAAAA TCTCATACTA CCAATGCAGG
ACTATTATGT TATGCCGATT GGCGATATGC CAACCAAGCT CCATGGTTTC ACGCTCCACC
CAAGCTACAA TGGGAAGATC AAGTAGTACT CATCACGGGA GGTGAGATAC AGTTCGCCCT
TCAAACTTCC CGAGAGTAAT ATAATAACTT GCTATGCTAG GTGGCTCAGG CATCGGTGCT
CTATTGGCTC AAACACTTGC GAATCGTAAT GTCGCTGTCG CCATACTCAC GAAAGACCTA
CCAAAGCAAC CATTCTCCCA CAGTAAGTTT ATCACCTTGT GTGAACGCTA TGGGTAGTGC
TGATGGTTAG GATAGGCCAT ATTCATGTAT TTGCGTGTGA CGTCTCTGAT TATAACGCAG
TAATGGGAGT GTCTGCTCGA GTGCGAGAAG CAGTGGGTGC ACTCCACTAT GGCTCATCAC
TCTAAGGTAC TCAATATTTC CTCAGGTTGG TGATCCTACA ATAATAATAA ATAATGCCGG
TATAGTCAGT GGCAAGCTAC TCCTAGATCT GACTGAAGAG GATATAACAA GGTAAAGCCC
AAAAAAGAAT GACGTTTTGT TCGCACCCGC TGAATTGAGC CTACTAAGCA CATTTGGATC
CAATACTCTT GCGCACTTTT GGGTCCTCAA AGCGTTTCTC CCGGCCATGC TGCGTCGAGG
CAGAGGCCAT ATCGTGACCA TGTCTAGCAT ATTAGGCATC GTTGGTGCTG CTCAAATGAG
TAGGTATTCC TCCAGCATCC GACCTGATGT CTTTACTGAC AGTGACCGCC ATCTGTAGCT
GATTATTGCG CAAGTAAAGC TGCAGTGCTC AGCTTACACC AAACATTGCG ATTTGAGTTA
GATAGCCGGT ACCAGACACC TGGTATCAGG ACCACGCTTG TCTTACCAGC GTATACACTT
ACATCTCTAT TCAACCGTGT AAAGCTCCCT ACAAATCGGC TTTTCGACTT TCTTTGCCCT
CCGGTTCAGC CTCGAGCTGT TGTCGAACAC ATCATATCTG CTTTAGATGA TAACGAGAGC
CGAATCATTC GACTACCATT CTATTCCAAT TTTGCTAGAC TCTGTGGAGA TGCCGTCGGG
CTGGTACCAG CAGGGGTCAG AGATTTTGTT CAATGGCTTT CAGGTGCTGA TTATGCCATG
AAAGGCTACG GTCCTACCCC TGATGCGGGA GAGCGGTTGC TGGCGGAAAG GCAGTCTCAT
ACACCGCTCA ACAGGAAAAG AACAGAGTAG CTTGCAGAAA GTGTGTGCTC TTCTA
|
|---|
| Protein sequence | MGVSARVREA VGDPTIIINN AGIVSGKLLL DLTEEDITST FGSNTLAHFW VLKAFLPAML
RRGRGHIVTM SSILGIVGAA QMTDYCASKA AVLSLHQTLR FELDSRYQTP GIRTTLVLPA
YTLTSLFNRV KLPTNRLFDF LCPPVQPRAV VEHIISALDD NESRIIRLPF YSNFARLCGD
AVGLVPAGVR DFVQWLSGAD YAMKGYGPTP DAGERLLAER QSHTPLNRKR TE
|
|---|
| |