| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNH02010 |
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| Symbol | |
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| ID | 3259282 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_006693 |
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| Strand | + |
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| Start bp | 560963 |
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| End bp | 565491 |
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| Gene Length | 4529 bp |
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| Protein Length | 1096 aa |
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| Translation table | |
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| GC content | 47% |
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| IMG OID | 638258286 |
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| Product | transcription activator snf2l1, putative |
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| Protein accession | XP_572375 |
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| Protein GI | 58270438 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.606714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTTTCCCTCC ATCTATCTCC AGTCCTACAA TAATGGCAAG TACCCGCGAT CTGCTTCCAT
CTCTTCCAAC TGACACCCGC CCGCTCAGAA CCCTCTATTA GCAGCCTCCA GCGCTGCAAA
CCCCAACAAC ACTTCCGTGG ACGACGACAA GCTGTCAGAC TATGTTCCCA ACTCACGCGA
TCTGAGCGTT TCTCGCGCTG TAAGTCGCCA CCTCCGTGCC ATAAAATAGG GCGTCATGTT
GTACTCTACG CCTAGAGACG ACGCCCAAGA CCCCGACTAC TTGAAATAAC GTGATAACTG
ACATTTGTTC CGCTCATATT AGCCTTCTGT AATAGCTTCC GAAGATGCAG GTCATCTCGA
CACCGCACCA CAAACACCTG AGCCGGAGGA AGATGAGGAG GATGAGATTC CCGAGGATGA
ATTGAACGAG GAGGAATTAA TGGATGGAAA GGTTGGTGGC GTGTCACTCA CTGGATTCAA
AATCGCGACG CTTGAGCTTC TATGTGGCTG CTCCATCTTG TTGAAGCTAC CAATAGGCAC
AGGTCATGGA TGAAAACGGT AATGCTGACA GGTTTTCATA CAATAGAAGA TCACACCTTC
TGCTGCCAAG CGTGCTGCCC AGGCTAGTGC GAAAAAGGCG CAAACGGCAG AAAGAAAAGC
TCAGCATGCG GAAATCGGTA AGAAGCGAAG TGCCATTGAG CAAGCAAGGG TAAGTTCTAT
ACATGGTAAA AAGGCAAAAT GATCATGTAT TGATGGATCC TTAGTTTGCG GACTCTATGA
AGAGATTCAA CTATTTACTT GGACAGACCG AGCTTTTCCA GCACTTTATC GATCTCAAGG
TTCGTCTTGC TCATGTGTTT CTCGTTTAAC CAATGAGCTA ATGCAATTCG GTAGCGCCAA
CGAGAGCCCC AGTTTGCGCA AATGCTGGAC GAGCAGATTG CCAAGCAAGC GGGTAAGGGT
AAAAAGAAGG CAATGTATGT ATTACTATCA CCTACGCAGG CCCCATGCTC ACACACAGTT
AGCGATAACC GACACCGCAA GTCTGAAAAG GAAGAAGATG AAGAACTTTT GAAGGATGAA
GAAGAGGATG AACCGTTCGT GTTCGAGGAG AGTCCGGCGT GTGAGTATTC AGTTTCTCAT
CCGGATCCCA CAAATCTAAC GCTGCGCAGA CGTCAAGGGC GGCAAGATGC GAGATTATCA
AGTTCAGGGC CTAAACTGGA TGGTTTCTCT GCACCACAAC GGTATCAATG GTATTCTTGC
TGATGAAATG GTACGATTCG TGTCCGAGAA ACTCATTCTA CGTACTGATG AGTACACCAG
GGTCTCGGCA AAACTTTGCA AACTGTCGCT TTCATCGGAT ATCTCAAATT CCACCTAGGT
ATCCCCGGAC CTCACCTCAT CATTGTCCCC AAATCTACAC TCGACAACTG GGCTAGAGAA
GTTGCCAAGT GGGTCCCAGG ATTCGATGTC GTTGTGCTCC AAGGCACCAA GGAAGAGCGA
GGCGAACTCA TCTCAAGGCG TATCCTCACT CAAGACTTTG ACGTTCTCAT CACGTCATAC
GAAATGTGTC TTCGAGAAAA GTCTACTCTC AAACGATTTA GCTGGGAGTA TATTATCATT
GACGAAGCTC ATCGTATCAA GAATGTCGAC TCCCTTCTTT CGCAGATTAT TAGGACGTTC
GTCAGTCGTG GAAGGTTACT GATTACCGGT ACACCATTGC AAAACAATTT GCAAGAGCTG
TGGGCCTTGT TGAACTTTAT CTTGCCCGAC GTCTTCTCTT CCAGGTGTGT CCTCTCTATT
TTATAGCGTG CACTCGCAGC TGACAGAGTT CCAGTGAGGA CTTCGATGCC TGGTTCAAGA
CCAAGGACGA AGCCGATCCC GACGCCGTTG TCAAGCAACT CCACAAAGTC CTCCGACCTT
TCCTGCTTCG ACGAGTCAAA GCCGATGTCG AGCACTCTCT CTTGCCAAAG AAGGAGATTA
ACCTTTATGT CGGTATGACT GAGATGCAGA GGAAGTGGTA CAAGAGTCTT CTGGAGAAGG
ATATCGATGC CGTCAACGGT ATGACTGGTA AGAAGGAGGG CAAAACGAGG TTGTTGAACA
TTGTTATGCA ACTCCGAAAA TGTTGTAACC ACCCATACCG TAAGTCTTTT TACTTTTATT
CGCTCAACCT CTCGATGATT GCTGACAAAC TAGCAGTCTT TGATGGCGCC GAGCCCGGGC
CGCCTTTTAC CACCGATCAG CATCTTGTTG ACAATGCTGG TAAAATGGTC ATTCTTGACA
AACTCCTCAA ATCCATGAAG GCGAAGGGTT CTCGGGTTCT CATCTTTTCT CAAATGAGTA
GAATGTTGGA CATCTTGGAG GATTACTGTC AGTTCCGTGG ACACCGTAAG TCCAGATTGA
TCCGCAACCA TACCATCAAA TGGCTTAACA TGTCATGATA GAGTACTGCC GTATTGATGG
TAGTACCGCT CATGAGGACC GAATCGCTGC GATTGACGAG TACAACGCCC CTGAGAGTGA
GAAATTCGTA TTCCTTCTTA CTACCCGAGC TGGTGGTTTG GGTATCAACC TTGTTACCGC
CGACATTGTC GTTCTCTTTG ATTCAGACTG GTGAGTTTAT ATTGCAGATA AGAATGAGCA
AATTTCTAAA TAGAACACCC AACCAGGAAC CCTCAAGCCG ATTTACAAGC TATGGACAGA
GCTCACCGTA TTGGTCAGAC AAAGCAAGTC TACGTCTTTA GGTTCATCAC GCAGGATGCT
GTAGAGGAAC GTATCCTTGA ACGAGCCACA CAAAAGCTCA AGCTGGATCA GCTTGTTATC
CAGGAGGGCA GGGCACAGCA AACTGCTAAA GGTGAGTTAT AATTGCAGGT TTTTCATGGC
TTTGGACTGA CAAAAAAGCG ATAGTGGCCC AGAACAAGGA TGACTTGCTT GACATGATTC
AACATGGCGC GGAGAAGATT ATCAACAACA AGGAGAGGTG AGCTGTTGAA TCTTTACATG
ACTCAAATGT AATTGAGGCT GACGGTCACT ATGTAGCATG TTGATTGATG ACGACATCGA
TGAAATTATT CGACGAGGAG AGGAAAGGAC CAAGGAGATT AACAGCAAAT ATGCCGGTCT
CGACCTTGAC GCTTTGAATA ACTTCAAGTC TGAAAGTCTG GTAAACACCT GGGAAGGCGA
GGATTATGGC AACAGGGTGA GTTTTATTCA TTATGCATGT TGAAATGATG TTGCTAATAC
CTGGCTAGCA ACAAAAACGT CCCCTTCTTT GGATTGAGCC TTCCAAACGA GAGCGAAAGA
CCAATTATTC TGTGGATCAG TATTACCGAG ACTCTCTCAA GACTGGAGGG CCCAAGGCGG
ACAAACCCAA GGTTGCTCGT GCTCCCAAGC AGGTCGTCGT CAACGACTTC CAGTTCTATC
CCCCTCGTCT TGCGGAGCTA CAGAACAAGG AGACCGACTG GCACAGGAAG AGTATCAACT
ACCAAGTACC TGTGAGGGAA CCTGAAGAAG GAGAGACACA AGAACAGGTG GAGGCTGAGC
AAAAGGAGGA ACAGGAAAGG ATCGACAATG CCGTCCCCCT CTCGGAAGAG GAAGTTGCAG
AAAAGGAAAC TCTTGTTGGT GAAGGGTTCC ACGACTGGCA GCGGAGGCAT TTCCAGTCTT
TCATCAGAGC ATTGGAAAAG TACGGGCGAG ATGATCTGGA AAAGGTCGTG ACCGATGTTG
CGGACCGAAC AGAGGATGAA GTCAGGGAGT ATGCGGCTGT CTTTTTTGAA AGATATAAGG
AACTCAAGGG TAAGTGATAA AATTGCTGCA TTTGCTCGGT ATAGTAGTTG ACCGCATTAT
AGATTGGGAG AGGATCATGG ACCGTATCCG AGCAGGTGAA GAAAAGATTA AGGAGCAGCA
AGACCGTATC GATGTCCTCC ATCGCAAGAT CAAAGCTACT CGTTTCCCTC TCCAGGAACT
CAAGATCGTC TACGGTCAAA ATAAAGGCAA GGCTTATAGC GACGAAGAAG ACCGATTCTT
GCTTGTGAGG ATGCACCACC ACGGTATCGA TAGGGACGAC TGTTACGAAT TGATCAAGCG
AGATATTGGG GAATGGCCAC TTTTCAGGTG AGTGTCGTCC CATGAGAAGG AAACAGTGAT
GCGTAGACGC TGAATGAATA ACTAGGTTTG ACTGGTTTTT CAAGAGTCGG ACTCCTGATG
AGCTCAGGCG ACGGGCTCAA ACTTTGTTGT TATGTATCAT GAAGGAAGAT GATAAGGTTG
AGGATGAAAA GAAGCCTATC AAGGGCAAGG TAAGTAGAGA AGTAAGTGGG GTATAGGAAG
TTGGACGCTG ATGTTGTCAC TTTGAAGAAA CGTCCGATTG ACGAGCTCAA ATCTGGTCCG
GGATCAAGAG ACACCACACC AAGTGCAGCC GGGTCAAAGG GTAGCAAGAA GAAGAAGGTG
TAGGGATAGT AGTCGGCGCG TAATACGTAA CATTCGGGTT GAAGTAGATG TCACCTTTCC
ATTTCTAGTT GCCTTGTATG CACAGAATC
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| Protein sequence | MNPLLAASSA ANPNNTSVDD DKLSDYVPNS RDLSVSRAPS VIASEDAGHL DTAPQTPEPE
EDEEDEIPED ELNEEELMDG KKITPSAAKR AAQASAKKAQ TAERKAQHAE IGKKRSAIEQ
ARFADSMKRF NYLLGQTELF QHFIDLKRQR EPQFAQMLDE QIAKQAGKGK KKAIDNRHRK
SEKEEDEELL KDEEEDEPFV FEESPAYVKG GKMRDYQVQG LNWMVSLHHN GINGILADEM
GLGKTLQTVA FIGYLKFHLG IPGPHLIIVP KSTLDNWARE VAKWVPGFDV VVLQGTKEER
GELISRRILT QDFDVLITSY EMCLREKSTL KRFSWEYIII DEAHRIKNVD SLLSQIIRTF
VSRGRLLITG TPLQNNLQEL WALLNFILPD VFSSSEDFDA WFKTKDEADP DAVVKQLHKV
LRPFLLRRVK ADVEHSLLPK KEINLYVGMT EMQRKWYKSL LEKDIDAVNG MTGKKEGKTR
LLNIVMQLRK CCNHPYLFDG AEPGPPFTTD QHLVDNAGKM VILDKLLKSM KAKGSRVLIF
SQMSRMLDIL EDYCQFRGHQ YCRIDGSTAH EDRIAAIDEY NAPESEKFVF LLTTRAGGLG
INLVTADIVV LFDSDWNPQA DLQAMDRAHR IGQTKQVYVF RFITQDAVEE RILERATQKL
KLDQLVIQEG RAQQTAKVAQ NKDDLLDMIQ HGAEKIINNK ESMLIDDDID EIIRRGEERT
KEINSKYAGL DLDALNNFKS ESLVNTWEGE DYGNRQQKRP LLWIEPSKRE RKTNYSVDQY
YRDSLKTGGP KADKPKVARA PKQVVVNDFQ FYPPRLAELQ NKETDWHRKS INYQVPVREP
EEGETQEQVE AEQKEEQERI DNAVPLSEEE VAEKETLVGE GFHDWQRRHF QSFIRALEKY
GRDDLEKVVT DVADRTEDEV REYAAVFFER YKELKDWERI MDRIRAGEEK IKEQQDRIDV
LHRKIKATRF PLQELKIVYG QNKGKAYSDE EDRFLLVRMH HHGIDRDDCY ELIKRDIGEW
PLFRFDWFFK SRTPDELRRR AQTLLLCIMK EDDKVEDEKK PIKGKKRPID ELKSGPGSRD
TTPSAAGSKG SKKKKV
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