Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CNH00220 |
Symbol | |
ID | 3259328 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006693 |
Strand | + |
Start bp | 1121881 |
End bp | 1125425 |
Gene Length | 3545 bp |
Protein Length | 833 aa |
Translation table | |
GC content | 48% |
IMG OID | 638258463 |
Product | ubiquitin-protein ligase, putative |
Protein accession | XP_572216 |
Protein GI | 58270120 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5021] Ubiquitin-protein ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.311807 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GATCTCGCCT TTCTTTTCGT CCAACGCCCA CTCTAGACCC GTCTGTACTA ATACTGCCCA TAAAATTTCC TCAATCTTCA CACCATGGTC GCCTTCACGG CCACTGGAAA CAGAAACTTG TATGTCATCG CCTTTGCCAC ACCGTGTATA AGAGCAACTT GCTTACTGTC CGATGCTCTT TTTCTCATCC TCCAACCACC GATCAACATA TATAACTCAG AACACGAAAG ATCCGAGTGA CGAGTAAGTT CTGCTGTCCA TTACGCCGCC TCACACGCTT ACTTGACATC CTTTATACCT GCCTCCACCC AACAATTGTC ACTTTCCCAT CCTATGACTC ATTCTCTTGC TCCACCCTTT CACTACACAA CAGTCGTCGC GGCAGATTCC CTCATTAAGC GTGATATCCT CCGACTCCCA GACCCATTCG CTATCGTCTC TGTTGACTCG GAGCAAATTC ACACCACTTC GGTCATCAAG AGGACACTGA ACCCTTATTG GAATGAGTAG GTCGTGAGAC TTTGAGATTG GGGTTGGTTC TGACTGTTTC TGTAGGAATT TTGACATCGA CGTAAAGGAT TCGTCCATTG TGGCAGTACA AATCTTTGAC CAGCGGAAGT TCAAGAGAAA GGTTGGTGTC GGCGCAGTTG TTCTACCCTA AATCACTGAC CCCACTCGTA GCAAGACCAA GGTTTCCTTG GTGTGATCAA TATCAAAGTT TCCGATGTCA TTGATCTTGA ACTTGGCGGT CAGGAGATGC TCACAAAGGA GCTCAAAAAG GGTTCCGACG GCCAGGCGGT CCAAGGCAAA TTGATCGTTT ACCTCTCTAC TCAAACCAAC GCTCCTATCT CGAACAACCC CGCCGCTTCT AGCTCCACCA ACGTCGCTAC ACCTGCGCCT GCTGCTTCTG CTTTGGCTTC GAACAACGCC GCTGGCCAAT CTATCTCTCG TCCCGCCTCT GCAATTCAGC CCGCCCAAGG CGCCGAAGCA TCCGTTCCTA CTTCTGCCGA CGCCATTGCT TCTGCTGTTC CCCAACCCGC AGCCCAAGCA GTGGGTGTGT CTTCTTCCGG TGCTCCCAAC GTCAACCCCA CCATCCAAGC TGCTTCTACT GGTCAAACGG GAACTAGCAC CAACGTAGGC CATGAATTCG ATTCTCATTC TGACCAGTAC GGACCATTGC CTGTTGGTTG GGAACGTCGT ATTGACCATC TTGGCCGTCA ATACTATGTC GATCACAACA CCCGTACCAC GACATGGAAC CGCCCGAGCG ATAATGAGTT GTCTAACAGC GCCACTCAAG CGACATCCAC TGGTGAAGCC AGAGCGAGGC ACAACCAGAG GACATTGCCT GATGAAATGC TGGACGTGCA GCAGAGCGGT GCGAACAGTG GTGGCGCTAC CACCCCTACC ACTGGAAGTG CCCAGGCGAA CCCCGTAAAC GCTAGCAACG CTACCACTGC CGGACAAGGT CCTTTGCCTT CTGGTTGGGA ACAGCGATTC ACTCCCGAAG GTCGTCCTTA CTTCGTCGAT CACAACACCC GTACGACGAC ATGGGTTGAC CCTCGTCGTC AGCAACTCTT GCGTTTCATC GCCCCCGGCC AGCAGGGCAA CTTGTCTGTC CAGCCTCAAA CCGTCAGCCA GCTCGGTCCC TTGCCTAGTG GTTGGGAGAT GAGGTTGACA TCCACCGCGA GAGTATACTT TGTTGACCAC AATACCAAAA CGACTACATG GGACGACCCT AGATTGCCTT CTTCGCTCGA CCAGAATGTA CCGCAGTACA AACGAGACTT CAGAAGGAAG CTCATCTACT TTAGGTCCCA GCCTGCGTTG AGGAGTAACA CCGGGCAGTG TCACATGAAG GTGTCGCGTG ATAATATCTT TGAGGGAAGC TATACCGAGA TCATGAGGCA GACCCCGAAC GATTTGAAGA AGAGGTTGAT GATCAAATTT GAGGGTGAAG ATGGTTTGGA TTACGGAGGT CTTTCGAGGT GAGTCGCATC TTCATTTACT TGTACGTTGC TAAATCCTCT CTCAGAGAAT TCTTCTTCCT TCTTTCGCAC GAAATGTTCA ACCCCTTCTA CTGTCTGTTT GAGTACTCCG CTCACGACAA CTATACCCTC CAAATCAACC CCAACTCTGG CGTGAACCCA GAGCATCTCA ATTACTTCAA GTTCATTGGC CGTGTCGTCG GTCTCGGTAT CTTCCACCGT CGTTTCCTCG ATGCGTACTT TATTGTCTCA TTCTACAAGA TGATCTTGGG TAAGAAGATT GCACTCCAAG ATTTGGAGAG TGTGGACGCG GGTTTGTTTA GGGGTTTGAC GTGGATGTTG GAGAATGATA TCACGGGTGT CATTGAGGAT ACTTTCTCGA TTACTGAGGA GCATTTTGGG GAGGTTGTCA CCGTTGATTT GAAGCCTGGA GGTAGGGATG TTGAGGTGAC AGAGGATAAC AAGAAAGACT ACGTCGAGTA TGTCTCGTCT ATTCTCTGAT CAATGGGTTT GGTTGCTGAC ACTTCCCATC AAAGCCTTGT GACTGAATAT CGAATCTCTA AACGAGTATC CGAGCAATTC CAAGCCTTCA TGTCCGGTTT CAACGAACTC ATCCCGCAAG AACTCATCAA CGTATTCGAT GAGCGCGAGC TCGAACTCCT TATCGGTGGT ATGTCCGAGA TCGACGTGGA CGACTGGCAG AAACACACGG ATTACAGAGG ATACAACCCC TCGGATGAAG TGGTCGAGTG GTTCTGGAAG ATTGTTAAGA ACTGGCCTGC AGAGAAGAAG TCAAGGTTAT TGCAGTTCAC GACTGGAACC TCGAGGATCC CTGTGAATGG TTTCAAGGAT CTGCAAGGGT CCGATGGACC GAGAAGGTTT ACGATTGAGA AGGCGGGAGA AGTGACGCAG TTGCCGAAAT CGCACACTTG TTTCAATAGA ATTGATTTAC CGGCTTACAA GTCTTATGAG GCTTTAGAGC AAAAATTGAC TATTGCGTAA GTTACCATCC CACGTTCTTC TAATAATCAA TAATTAGATA TCAGGACGCT GATGACATCA ATTTAGTGTT GAAGAAACTG TCGGTTTCGG CCAAGAATAA ACCCATCACC TTATCTTCAC GTCTACCTCT ACTTTCCATC CACCACTTTG TTTTTAGCAG TTGTTTAAAT TCATTCTTTA TTCATCTTCA TTTGTGTCCA TACCATTTTA ATATATAGAC GAAACATCTG TAATAATTTT TCACTAGCCG CCCCACTTTT CTTTTATCGC CTTCGTGTCG CATTCGTTTA TGCGTTTTTG TTTCTGTGTG TAGTTGAGAT CGTACCACTG CAGCGAAGTG ATTTGGATAA AGATACACGT TTCGGCCTCT TATCGTTTTA TCTCTTCAAT CCCCTCTCTT TTTGTTGAAG TACATTTAGT CGCAACATCG CACAAAGACC CGATCAGACT AGTTTGTTTG TGTAGTTTAT ATCTCTCGCT CTTTCCCTCA CCTAGTTCGT ATGTTTGAAA CAAGACAAAG TACTTCTGAG GGAAACGGAT AGGAAAAGAA TTAGG
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Protein sequence | MVAFTATGNR NLTRKIRVTI VAADSLIKRD ILRLPDPFAI VSVDSEQIHT TSVIKRTLNP YWNENFDIDV KDSSIVAVQI FDQRKFKRKQ DQGFLGVINI KVSDVIDLEL GGQEMLTKEL KKGSDGQAVQ GKLIVYLSTQ TNAPISNNPA ASSSTNVATP APAASALASN NAAGQSISRP ASAIQPAQGA EASVPTSADA IASAVPQPAA QAVGVSSSGA PNVNPTIQAA STGQTGTSTN VGHEFDSHSD QYGPLPVGWE RRIDHLGRQY YVDHNTRTTT WNRPSDNELS NSATQATSTG EARARHNQRT LPDEMLDVQQ SGANSGGATT PTTGSAQANP VNASNATTAG QGPLPSGWEQ RFTPEGRPYF VDHNTRTTTW VDPRRQQLLR FIAPGQQGNL SVQPQTVSQL GPLPSGWEMR LTSTARVYFV DHNTKTTTWD DPRLPSSLDQ NVPQYKRDFR RKLIYFRSQP ALRSNTGQCH MKVSRDNIFE GSYTEIMRQT PNDLKKRLMI KFEGEDGLDY GGLSREFFFL LSHEMFNPFY CLFEYSAHDN YTLQINPNSG VNPEHLNYFK FIGRVVGLGI FHRRFLDAYF IVSFYKMILG KKIALQDLES VDAGLFRGLT WMLENDITGV IEDTFSITEE HFGEVVTVDL KPGGRDVEVT EDNKKDYVDL VTEYRISKRV SEQFQAFMSG FNELIPQELI NVFDERELEL LIGGMSEIDV DDWQKHTDYR GYNPSDEVVE WFWKIVKNWP AEKKSRLLQF TTGTSRIPVN GFKDLQGSDG PRRFTIEKAG EVTQLPKSHT CFNRIDLPAY KSYEALEQKL TIAVEETVGF GQE
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